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(v1.7.1.9068) new logo, unit tests

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dr. M.S. (Matthijs) Berends
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@ -20,7 +20,7 @@
<script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet">
<script src="../extra.js"></script><meta property="og:title" content="How to determine multi-drug resistance (MDR)">
<meta property="og:description" content="AMR">
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png">
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg">
<meta name="twitter:card" content="summary_large_image">
<meta name="twitter:creator" content="@msberends">
<meta name="twitter:site" content="@univgroningen">
@ -44,7 +44,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9068</span>
</span>
</div>
@ -358,16 +358,16 @@ Unique: 2</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span>
<span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span>
<span class="co"># 1 R I I R I I</span>
<span class="co"># 2 S S S S I S</span>
<span class="co"># 3 S I I S S I</span>
<span class="co"># 4 R I S R R R</span>
<span class="co"># 5 R S R R I I</span>
<span class="co"># 6 I S R S I S</span>
<span class="co"># 1 R R I S I I</span>
<span class="co"># 2 I I I I R S</span>
<span class="co"># 3 I R S I R S</span>
<span class="co"># 4 R S I I I R</span>
<span class="co"># 5 S S R I I S</span>
<span class="co"># 6 R R R I S R</span>
<span class="co"># kanamycin</span>
<span class="co"># 1 I</span>
<span class="co"># 2 I</span>
<span class="co"># 3 R</span>
<span class="co"># 2 R</span>
<span class="co"># 3 S</span>
<span class="co"># 4 R</span>
<span class="co"># 5 R</span>
<span class="co"># 6 R</span></code></pre></div>
@ -413,32 +413,32 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3230</td>
<td align="right">64.60%</td>
<td align="right">3230</td>
<td align="right">64.60%</td>
<td align="right">3246</td>
<td align="right">64.92%</td>
<td align="right">3246</td>
<td align="right">64.92%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">984</td>
<td align="right">19.68%</td>
<td align="right">4214</td>
<td align="right">84.28%</td>
<td align="right">999</td>
<td align="right">19.98%</td>
<td align="right">4245</td>
<td align="right">84.90%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">445</td>
<td align="right">8.90%</td>
<td align="right">4659</td>
<td align="right">93.18%</td>
<td align="right">437</td>
<td align="right">8.74%</td>
<td align="right">4682</td>
<td align="right">93.64%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">241</td>
<td align="right">4.82%</td>
<td align="right">218</td>
<td align="right">4.36%</td>
<td align="right">4900</td>
<td align="right">98.00%</td>
</tr>