1
0
mirror of https://github.com/msberends/AMR.git synced 2026-03-16 02:47:52 +01:00

Built site for AMR@3.0.1.9031: b6f8584

This commit is contained in:
github-actions
2026-03-08 10:40:48 +00:00
parent ab5ce59112
commit 1e81c2a013
87 changed files with 159 additions and 142 deletions

View File

@@ -1,6 +1,6 @@
# Changelog
## AMR 3.0.1.9030
## AMR 3.0.1.9031
#### New
@@ -45,16 +45,6 @@
#### Fixes
- [`mdro()`](https://amr-for-r.org/reference/mdro.md): when a base
beta-lactam drug column is missing but a corresponding drug+inhibitor
combination is present in the data and resistant (e.g.,
piperacillin/tazobactam = R while piperacillin is absent), the base
drug is now correctly inferred as resistant. This ensures MDRO
classification is not missed due to test-ordering differences in the
laboratory. The reverse direction is also valid: susceptibility in a
combination does not imply susceptibility in the base drug (the
inhibitor may be responsible), so only resistance is propagated.
Closes [\#209](https://github.com/msberends/AMR/issues/209)
- Fixed a bug in [`as.sir()`](https://amr-for-r.org/reference/as.sir.md)
where values that were purely numeric (e.g., `"1"`) and matched the
broad SIR-matching regex would be incorrectly stripped of all content
@@ -88,6 +78,15 @@
#### Updates
- [`mdro()`](https://amr-for-r.org/reference/mdro.md) now infers
resistance for a *missing* base drug column from an *available*
corresponding drug+inhibitor combination showing resistance (e.g.,
piperacillin is absent but required, while piperacillin/tazobactam
available and resistant). Can be set with the new argument
`infer_from_combinations`, which defaults to `TRUE`
([\#209](https://github.com/msberends/AMR/issues/209)). Note that this
can yield a higher MDRO detection (which is a good thing as it has
become more reliable).
- [`susceptibility()`](https://amr-for-r.org/reference/proportion.md)
and [`resistance()`](https://amr-for-r.org/reference/proportion.md)
gained the argument `guideline`, which defaults to EUCAST, for