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mirror of https://github.com/msberends/AMR.git synced 2025-07-08 11:51:59 +02:00

(v0.6.1.9043) age doc fix

This commit is contained in:
2019-05-30 08:51:38 +02:00
parent 8b5e2b030b
commit 1f8ee3ec3e
14 changed files with 50 additions and 51 deletions

View File

@ -61,7 +61,7 @@ age_groups(ages, c(1, 2, 4, 6, 13, 17))
# resistance of ciprofloxacine per age group
library(dplyr)
septic_patients \%>\%
filter_first_isolate) \%>\%
filter_first_isolate() \%>\%
filter(mo == as.mo("E. coli")) \%>\%
group_by(age_group = age_groups(age)) \%>\%
select(age_group, CIP) \%>\%

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@ -14,8 +14,8 @@ ggplot_rsi(data, position = NULL, x = "Antibiotic",
fill = "Interpretation", facet = NULL, breaks = seq(0, 1, 0.1),
limits = NULL, translate_ab = "name", combine_SI = TRUE,
combine_IR = FALSE, language = get_locale(), fun = count_df,
nrow = NULL, datalabels = TRUE, datalabels.size = 3,
datalabels.colour = "grey15", ...)
nrow = NULL, datalabels = FALSE, datalabels.size = 3,
datalabels.colour = "white", ...)
geom_rsi(position = NULL, x = c("Antibiotic", "Interpretation"),
fill = "Interpretation", translate_ab = "name",
@ -31,7 +31,7 @@ scale_rsi_colours()
theme_rsi()
labels_rsi_count(position = NULL, x = "Antibiotic",
datalabels.size = 3, datalabels.colour = "grey15")
datalabels.size = 3, datalabels.colour = "white")
}
\arguments{
\item{data}{a \code{data.frame} with column(s) of class \code{"rsi"} (see \code{\link{as.rsi}})}