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(v2.1.1.9233) chore: make all argument texts full sentences

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dr. M.S. (Matthijs) Berends
2025-03-31 14:53:24 +02:00
parent 63099cd81e
commit 1fdab84103
91 changed files with 720 additions and 701 deletions
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6
man/as.mo.Rd
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@ -33,7 +33,7 @@ mo_reset_session()
mo_cleaning_regex()
}
\arguments{
\item{x}{A \link{character} vector or a \link{data.frame} with one or two columns}
\item{x}{A \link{character} vector or a \link{data.frame} with one or two columns.}
\item{Becker}{A \link{logical} to indicate whether staphylococci should be categorised into coagulase-negative staphylococci ("CoNS") and coagulase-positive staphylococci ("CoPS") instead of their own species, according to Karsten Becker \emph{et al.} (see \emph{Source}). Please see \emph{Details} for a full list of staphylococcal species that will be converted.
@ -55,11 +55,11 @@ This excludes enterococci at default (who are in group D), use \code{Lancefield
\item{only_fungi}{A \link{logical} to indicate if only fungi must be found, making sure that e.g. misspellings always return records from the kingdom of Fungi. This can be set globally for \link[=mo_property]{all microorganism functions} with the package option \code{\link[=AMR-options]{AMR_only_fungi}}, i.e. \code{options(AMR_only_fungi = TRUE)}.}
\item{language}{Language to translate text like "no growth", which defaults to the system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}})}
\item{language}{Language to translate text like "no growth", which defaults to the system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}).}
\item{info}{A \link{logical} to indicate that info must be printed, e.g. a progress bar when more than 25 items are to be coerced, or a list with old taxonomic names. The default is \code{TRUE} only in interactive mode.}
\item{...}{Other arguments passed on to functions}
\item{...}{Other arguments passed on to functions.}
}
\value{
A \link{character} \link{vector} with additional class \code{\link{mo}}