From 1fe0350d1538899167877cc54f145321e4ce8a63 Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 22 Feb 2023 14:50:02 +0000 Subject: [PATCH] Built site for AMR: 1.8.2.9139@c2cfc5e --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/AMR.html | 537 +++++++++--------- .../AMR_files/figure-html/disk_plots-1.png | Bin 39287 -> 38760 bytes .../figure-html/disk_plots_mo_ab-1.png | Bin 55289 -> 56650 bytes .../AMR_files/figure-html/mic_plots-1.png | Bin 27745 -> 27731 bytes .../AMR_files/figure-html/mic_plots-2.png | Bin 36580 -> 38074 bytes .../figure-html/mic_plots_mo_ab-1.png | Bin 38574 -> 38822 bytes .../figure-html/mic_plots_mo_ab-2.png | Bin 49585 -> 49225 bytes articles/AMR_files/figure-html/plot 1-1.png | Bin 41510 -> 41766 bytes articles/AMR_files/figure-html/plot 3-1.png | Bin 28459 -> 28444 bytes articles/AMR_files/figure-html/plot 4-1.png | Bin 78253 -> 78216 bytes articles/AMR_files/figure-html/plot 5-1.png | Bin 49910 -> 49776 bytes articles/EUCAST.html | 2 +- articles/MDR.html | 56 +- articles/PCA.html | 2 +- articles/SPSS.html | 2 +- articles/WHONET.html | 15 +- articles/datasets.html | 2 +- articles/index.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 2 +- authors.html | 2 +- index.html | 4 +- news/index.html | 26 +- pkgdown.yml | 2 +- reference/AMR-deprecated.html | 2 +- reference/AMR-options.html | 2 +- reference/AMR.html | 2 +- reference/Rplot005.png | Bin 13184 -> 13142 bytes reference/Rplot006.png | Bin 12708 -> 12657 bytes reference/Rplot007.png | Bin 13657 -> 12869 bytes reference/Rplot008.png | Bin 17950 -> 17961 bytes reference/Rplot009.png | Bin 8082 -> 8480 bytes reference/WHOCC.html | 2 +- reference/WHONET.html | 11 +- reference/ab_from_text.html | 5 +- reference/ab_property.html | 10 +- reference/add_custom_antimicrobials.html | 18 +- reference/add_custom_microorganisms.html | 2 +- reference/age.html | 22 +- reference/age_groups.html | 2 +- reference/antibiogram-1.png | Bin 15255 -> 26492 bytes reference/antibiogram-2.png | Bin 15454 -> 39648 bytes reference/antibiogram-3.png | Bin 0 -> 24603 bytes reference/antibiogram-4.png | Bin 0 -> 32347 bytes reference/antibiogram.html | 37 +- reference/antibiotic_class_selectors.html | 2 +- reference/antibiotics.html | 2 +- reference/as.ab.html | 7 +- reference/as.av.html | 2 +- reference/as.disk.html | 2 +- reference/as.mic.html | 2 +- reference/as.mo.html | 3 +- reference/as.sir.html | 22 +- reference/atc_online.html | 2 +- reference/av_from_text.html | 2 +- reference/av_property.html | 2 +- reference/availability.html | 2 +- reference/bug_drug_combinations.html | 2 +- reference/clinical_breakpoints.html | 2 +- reference/count.html | 2 +- reference/custom_eucast_rules.html | 2 +- reference/dosage.html | 2 +- reference/eucast_rules.html | 4 +- reference/example_isolates.html | 2 +- reference/example_isolates_unclean.html | 2 +- reference/first_isolate.html | 2 +- reference/g.test.html | 2 +- reference/get_episode.html | 112 ++-- reference/ggplot_pca.html | 2 +- reference/ggplot_sir.html | 2 +- reference/guess_ab_col.html | 2 +- reference/index.html | 2 +- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 2 +- reference/kurtosis.html | 6 +- reference/like.html | 2 +- reference/mdro.html | 2 +- reference/mean_amr_distance.html | 73 +-- reference/microorganisms.codes.html | 2 +- reference/microorganisms.html | 2 +- reference/mo_matching_score.html | 2 +- reference/mo_property.html | 2 +- reference/mo_source.html | 2 +- reference/pca.html | 2 +- reference/plot-1.png | Bin 27287 -> 26968 bytes reference/plot-2.png | Bin 26491 -> 26535 bytes reference/plot-3.png | Bin 27846 -> 28116 bytes reference/plot-4.png | Bin 38994 -> 38559 bytes reference/plot-5.png | Bin 38171 -> 38201 bytes reference/plot-6.png | Bin 36872 -> 36917 bytes reference/plot-7.png | Bin 38375 -> 35333 bytes reference/plot-8.png | Bin 54792 -> 54772 bytes reference/plot-9.png | Bin 24794 -> 26146 bytes reference/plot.html | 2 +- reference/proportion.html | 2 +- reference/random.html | 36 +- reference/resistance_predict.html | 2 +- reference/skewness.html | 4 +- reference/translate.html | 5 +- search.json | 2 +- 104 files changed, 544 insertions(+), 579 deletions(-) create mode 100644 reference/antibiogram-3.png create mode 100644 reference/antibiogram-4.png diff --git a/404.html b/404.html index 19574612..57f7beaf 100644 --- a/404.html +++ b/404.html @@ -36,7 +36,7 @@ AMR (for R) - 1.8.2.9138 + 1.8.2.9139