P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 08:52:15 +02:00
Code Releases Activity

(v1.4.0.9039) more unit tests

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2020-12-13 20:44:32 +01:00
parent ac22b8d5c1
commit 203bc20eb0
27 changed files with 100 additions and 63 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
.github/workflows/check.yaml vendored
View File

@ -120,16 +120,7 @@ jobs:
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- name: Check on older R versions
# no vignettes here, since they rely on R 3.3 and higher
if: matrix.config.r == '3.2'
env:
_R_CHECK_CRAN_INCOMING_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), build_args = "--no-build-vignettes" , error_on = "warning", check_dir = "check")
shell: Rscript {0}
- name: Check on newer R versions
if: matrix.config.r != '3.2'
- name: Run Check
env:
_R_CHECK_CRAN_INCOMING_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")

2
.github/workflows/codecovr.yaml vendored
View File

@ -67,5 +67,5 @@ jobs:
shell: Rscript {0}
- name: Test coverage
run: covr::codecov(line_exclusions = list("R/atc_online.R", "R/mo_source.R", "R/resistance_predict.R", "R/aa_helper_functions.R", "R/aa_helper_pm_functions.R", "R/zzz.R"), quiet = FALSE)
run: covr::codecov(line_exclusions = list("R/atc_online.R", "R/mo_source.R", "R/translate.R", "R/resistance_predict.R", "R/aa_helper_functions.R", "R/aa_helper_pm_functions.R", "R/zzz.R"), quiet = FALSE)
shell: Rscript {0}