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(v1.5.0.9013) updated tibble printing colours

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dr. M.S. (Matthijs) Berends
2021-01-28 16:09:30 +01:00
parent 331c1f6508
commit 20d638c193
39 changed files with 162 additions and 108 deletions
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NEWS.md
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# AMR 1.5.0.9012
## <small>Last updated: 25 January 2021</small>
# AMR 1.5.0.9013
## <small>Last updated: 28 January 2021</small>
### New
* Support for EUCAST Clinical Breakpoints v11.0 (2021), effective in the `eucast_rules()` function and in `as.rsi()` to interpret MIC and disk diffusion values. This is now the default guideline in this package.
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* `is.rsi.eligible()` now returns `FALSE` immediately if the input does not contain any of the values "R", "S" or "I". This drastically improves speed, also for a lot of other functions that rely on automatic determination of antibiotic columns.
* Functions `get_episode()` and `is_new_episode()` now support less than a day as value for argument `episode_days` (e.g., to include one patient/test per hour)
* Argument `ampc_cephalosporin_resistance` in `eucast_rules()` now also applies to value "I" (not only "S")
* Updated colours of values R, S and I in tibble printing
* Functions `print()` and `summary()` on a Principal Components Analysis object (`pca()`) now print additional group info if the original data was grouped using `dplyr::group_by()`
### Other
* Big documentation updates