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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9132</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9133</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,41 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 2 4 0.01 <=0.001 0.01 8 0.01 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 16 64 0.01 0.005 0.25 0.125 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 1 8 0.005 0.01 <=0.001 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.25 64 0.002 1 0.001 0.001 >=256 0.5 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 64 >=256 64 0.001 >=256 1 0.025 128 0.125 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.5 32 0.002 0.0625</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 40 41 23 18 8 43 47 14 7 13 50 15 45 42 46 44 47 47 44 42 11 22 49 42</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 47 38 24 40 41 33 14 35 42 37 44 14 48 46 19 48 10 8 46 50 37 34 11 37</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R I S R I I S I S I S I I R I S S R S S I R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R I I R I I R I S R R R I R I I R I S S I I S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 32 0.025 0.002 0.025 1 0.25 0.5 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 16 0.0625 0.01 0.002 4 0.002 0.005 2 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 0.01 0.025 0.5 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 8 1 0.5 0.002 128 0.01 8 0.005 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 0.025 0.025 0.125 0.002 4 0.002 0.005 0.025 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 16 1 4 0.002 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 1 8 1 4 16 2 1 4 2 16 1 4 1 1 1 16 4 8 1 2 1 8 4 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 1 4 4 >=32 16 8 2 8 16 >=32 2 4 4 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 8 4 4 1 16 2 16 2 4 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 1 0.125 0.125 <=0.025 <=0.025 0.0625 >=8 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 2 0.0625 1 >=8 0.125 2 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.125 1 >=8 0.5 4 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.5 0.5 0.125 1 0.25 0.025 0.125 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.125 0.025 0.025 0.025 0.025 4 0.0625 0.5 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.025 0.125 2 0.25 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 36 15 45 10 35 19 20 36 49 43 22 38 49 45 47 23 28 27 27 41 50 41 48 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 39 42 48 39 26 24 10 34 16 48 43 40 14 11 46 17 21 50 43 49 44 41 40 15 46</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 14 15 15 17 12 11 17 15 13 16 12 11 12 13 14 15 11 16 13 12 12 13 16 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 17 11 14 17 15 16 15 11 15 17 12 15 14 16 11 12 17 17 15 12 11 17 15 14</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 26 24 20 19 16 23 16 17 25 26 15 23 18 18 19 26 18 15 16 25 24 27 23 16 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 19 15 21 17 15 21 22 23 21 22 25 20 18 21 20 26 18 21 19 18 21 16 24 21</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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