diff --git a/R/data.R b/R/data.R index aee20e3e..e702f3bf 100755 --- a/R/data.R +++ b/R/data.R @@ -236,8 +236,8 @@ #' Dataset with ~2500 microorganisms #' -#' A dataset containing 2456 microorganisms. MO codes of the UMCG can be looked up using \code{\link{microorganisms.umcg}}. -#' @format A data.frame with 2456 observations and 12 variables: +#' A dataset containing 2464 microorganisms. MO codes of the UMCG can be looked up using \code{\link{microorganisms.umcg}}. +#' @format A data.frame with 2464 observations and 12 variables: #' \describe{ #' \item{\code{bactid}}{ID of microorganism} #' \item{\code{bactsys}}{Bactsyscode of microorganism} @@ -253,6 +253,15 @@ #' \item{\code{gramstain_nl}}{Gram of microorganism in Dutch, like \code{"Negatieve staven"}} #' } # source MOLIS (LIS of Certe) - \url{https://www.certe.nl} +# new <- microorganisms %>% filter(genus == "Bacteroides") %>% .[1,] +# new[1, 'bactid'] <- "DIAPNU" +# new[1, 'bactsys'] <- "DIAPNU" +# new[1, 'family'] <- "Veillonellaceae" +# new[1, 'genus'] <- "Dialister" +# new[1, 'species'] <- "pneumosintes" +# new[1, 'subspecies'] <- NA +# new[1, 'fullname'] <- paste(new[1, 'genus'], new[1, 'species']) +# microorganisms <- microorganisms %>% bind_rows(new) %>% arrange(bactid) #' @seealso \code{\link{guess_bactid}} \code{\link{antibiotics}} \code{\link{microorganisms.umcg}} "microorganisms" diff --git a/data/microorganisms.rda b/data/microorganisms.rda index a540ee69..3710cbee 100755 Binary files a/data/microorganisms.rda and b/data/microorganisms.rda differ diff --git a/data/microorganisms.umcg.rda b/data/microorganisms.umcg.rda index 8b67e19b..770ad7ef 100755 Binary files a/data/microorganisms.umcg.rda and b/data/microorganisms.umcg.rda differ