Migrate parallel computing in as.sir() from parallel:: to future/future.apply (#280)

* Migrate parallel computing in as.sir() from parallel:: to future/future.apply

Replace parallel::mclapply() and parallel::parLapply() with
future.apply::future_lapply(), enabling transparent support for any
future backend (multisession, multicore, mirai_multisession, cluster)
on all platforms including Windows.

When parallel = TRUE the function now: (1) respects an active
future::plan() set by the user without overriding it on exit, or
(2) sets a temporary multisession plan with parallelly::availableCores()
and tears it down on exit. The max_cores argument controls worker count
only when no user plan is active.

future and future.apply are added to Suggests in DESCRIPTION.

https://claude.ai/code/session_01M1Jvf2Miu6JL4TQrEh1wS8

* Require user plan() for parallel=TRUE; fix as_wt_nwt false-positive warnings

- parallel = TRUE now errors with a cli-styled message if no non-sequential
  future::plan() is active; users must call e.g. future::plan(future::multisession)
  before using parallel = TRUE (breaking change)
- Removed auto-setup/teardown of multisession plan inside as.sir(), which was
  slow and caused version-mismatch issues with load_all() workflows
- Added as_wt_nwt to the exclusion list in as_sir_method() to suppress
  false-positive "no longer used" warnings during parallel runs
- Fixed pieces_per_col row-batch calculation to use n_workers (total available
  workers from the active plan) instead of n_cores (workers clipped to n_cols),
  so row-batch mode activates correctly when n_cols < n_workers
- Updated @param parallel and @param max_cores roxygen docs; regenerated man/as.sir.Rd
- Updated sequential-mode hint to instruct users to set plan() first

https://claude.ai/code/session_01M1Jvf2Miu6JL4TQrEh1wS8

* fix parallel

* fix parallel

* unit tests

* unit tedts

---------

Co-authored-by: Claude <noreply@anthropic.com>

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: AMR
-Version: 3.0.1.9052
-Date: 2026-04-25
+Version: 3.0.1.9053
+Date: 2026-04-27
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)
   data analysis and to work with microbial and antimicrobial properties by
@@ -37,17 +37,18 @@ Authors@R: c(
   person(given = c("Casper", "J."),                 family = "Albers",      role = "ths", comment = c(ORCID = "0000-0002-9213-6743")),
   person(given = c("Corinna"),                      family = "Glasner",     role = "ths", comment = c(ORCID = "0000-0003-1241-1328")))
 Depends: R (>= 3.0.0)
-Suggests: 
+Suggests:
   cleaner,
   cli,
   crayon,
   curl,
   data.table,
   dplyr,
+  future,
+  future.apply,
   ggplot2,
   knitr,
   openxlsx,
-  parallelly,
   pillar,
   progress,
   readxl,