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Fixes for Salmonella

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dr. M.S. (Matthijs) Berends
2022-12-17 14:31:33 +01:00
parent 5f3a7694aa
commit 23fe427cbc
42 changed files with 375 additions and 445 deletions
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4
inst/tinytest/test-mo.R
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@ -127,8 +127,8 @@ expect_identical(as.character(as.mo(" ")), NA_character_)
expect_warning(as.mo("ab"))
expect_equal(
suppressWarnings(as.character(as.mo(c("Qq species", "", "CRSM", "K. pneu rhino", "esco")))),
c("UNKNOWN", NA_character_, "B_STNTR_MLTP", "B_KLBSL_PNMN_RHNS", "B_ESCHR_COLI")
suppressWarnings(as.character(as.mo(c("Qq species", "", "MRSA", "K. pneu rhino", "esco")))),
c("UNKNOWN", NA_character_, "B_STPHY_AURS", "B_KLBSL_PNMN_RHNS", "B_ESCHR_COLI")
)
# check for Becker classification