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(v0.7.1.9015) Remove freq()

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2019-07-29 13:33:48 +02:00
parent 9ac5a34b36
commit 240f03a672
75 changed files with 668 additions and 2877 deletions

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@ -26,7 +26,6 @@ This package can be used for:
* Plotting antimicrobial resistance ([tutorial](./articles/AMR.html))
* Determining first isolates to be used for AMR analysis ([manual](./reference/first_isolate.html))
* Applying EUCAST expert rules ([manual](./reference/eucast_rules.html))
* Descriptive statistics: frequency tables, kurtosis and skewness ([tutorial](./articles/freq.html))
This package is ready-to-use for a professional environment by specialists in the following fields:
@ -154,7 +153,6 @@ The `AMR` package basically does four important things:
* Calculate the resistance (and even co-resistance) of microbial isolates with the `portion_R()`, `portion_IR()`, `portion_I()`, `portion_SI()` and `portion_S()` functions. Similarly, the *number* of isolates can be determined with the `count_R()`, `count_IR()`, `count_I()`, `count_SI()` and `count_S()` functions. All these functions can be used with the `dplyr` package (e.g. in conjunction with `summarise()`)
* Plot AMR results with `geom_rsi()`, a function made for the `ggplot2` package
* Predict antimicrobial resistance for the nextcoming years using logistic regression models with the `resistance_predict()` function
* Conduct descriptive statistics to enhance base R: calculate `kurtosis()`, `skewness()` and create frequency tables with `freq()`
4. It **teaches the user** how to use all the above actions.