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(v1.6.0.9048) ab selectors overhaul

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dr. M.S. (Matthijs) Berends
2021-05-19 22:55:42 +02:00
parent 6920c0be41
commit 2413efd5c1
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NEWS.md
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# `AMR` 1.6.0.9047
## <small>Last updated: 18 May 2021</small>
# `AMR` 1.6.0.9048
## <small>Last updated: 19 May 2021</small>
### Breaking change
* All antibiotic class selectors (such as `carbapenems()`, `aminoglycosides()`) can now be used for filtering as well, making all their accompanying `filter_*()` functions redundant (such as `filter_carbapenems()`, `filter_aminoglycosides()`). These functions are now deprecated and will be removed in a next release.
```r
# select columns with results for carbapenems
example_isolates[, carbapenems()] # base R
example_isolates %>% select(carbapenems()) # dplyr
# filter rows for resistance in any carbapenem
example_isolates[any(carbapenems() == "R"), ] # base R
example_isolates %>% filter(any(carbapenems() == "R")) # dplyr
example_isolates %>% filter(if_any(carbapenems(), ~.x == "R")) # dplyr (formal)
# filter rows for resistance in all carbapenems
example_isolates[all(carbapenems() == "R"), ] # base R
example_isolates[carbapenems() == "R", ]
example_isolates %>% filter(all(carbapenems() == "R")) # dplyr
example_isolates %>% filter(carbapenems() == "R")
```
### New
* Function `custom_eucast_rules()` that brings support for custom AMR rules in `eucast_rules()`