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(v1.6.0.9048) ab selectors overhaul

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dr. M.S. (Matthijs) Berends
2021-05-19 22:55:42 +02:00
parent 6920c0be41
commit 2413efd5c1
32 changed files with 1182 additions and 939 deletions
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3
_pkgdown.yml
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@ -149,7 +149,7 @@ reference:
desc: >
Use these function for the analysis part. You can use `susceptibility()` or `resistance()` on any antibiotic column.
Be sure to first select the isolates that are appropiate for analysis, by using `first_isolate()` or `is_new_episode()`.
You can also filter your data on certain resistance in certain antibiotic classes (`filter_ab_class()`), or determine multi-drug resistant microorganisms (MDRO, `mdro()`).
You can also filter your data on certain resistance in certain antibiotic classes (`carbapenems()`, `aminoglycosides()`), or determine multi-drug resistant microorganisms (MDRO, `mdro()`).
contents:
- "`proportion`"
- "`count`"
@ -162,7 +162,6 @@ reference:
- "`ggplot_rsi`"
- "`bug_drug_combinations`"
- "`antibiotic_class_selectors`"
- "`filter_ab_class`"
- "`resistance_predict`"
- "`guess_ab_col`"