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(v0.8.0.9030) depend on tidyr >= 1.0.0

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dr. M.S. (Matthijs) Berends
2019-11-11 10:46:39 +01:00
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NEWS.md
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# AMR 0.8.0.9029
<small>Last updated: 10-Nov-2019</small>
# AMR 0.8.0.9030
<small>Last updated: 11-Nov-2019</small>
### New
* Functions `susceptibility()` and `resistance()` as aliases of `proportion_SI()` and `proportion_R()`, respectively. These functions were added to make it more clear that I should be considered susceptible and not resistant.
* Functions `susceptibility()` and `resistance()` as aliases of `proportion_SI()` and `proportion_R()`, respectively. These functions were added to make it more clear that "I" should be considered susceptible and not resistant.
```r
library(dplyr)
example_isolates %>%
group_by(bug = mo_name(mo)) %>%
summarise(amoxicillin = resistance(AMX),
amox_clav = resistance(AMC)) %>%
filter(!is.na(amoxicillin) | !is.na(amox_clav))
```
* Support for a new MDRO guideline: Magiorakos AP, Srinivasan A *et al.* "Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance." Clinical Microbiology and Infection (2012).
* This is now the new default guideline for the `mdro()` function
* The new Verbose mode (`mdro(...., verbose = TRUE)`) returns an informative data set where the reason for MDRO determination is given for every isolate, and an list of the resistant antimicrobial agents