diff --git a/DESCRIPTION b/DESCRIPTION index bf2704ef..50dae8a3 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 1.6.0.9004 +Version: 1.6.0.9005 Date: 2021-04-16 Title: Antimicrobial Resistance Data Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index fd7d3e95..779d7755 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 1.6.0.9004 +# AMR 1.6.0.9005 ## Last updated: 16 April 2021 ### New diff --git a/R/aa_helper_functions.R b/R/aa_helper_functions.R index cdf69da1..084e0d35 100755 --- a/R/aa_helper_functions.R +++ b/R/aa_helper_functions.R @@ -222,7 +222,7 @@ is_valid_regex <- function(x) { error = function(e) rep(TRUE, length(x))) regex_valid <- vapply(FUN.VALUE = logical(1), X = x, - FUN = function(y) !"try-error" %in% class(try(grepl(y, ""), + FUN = function(y) !"try-error" %in% class(try(grepl(y, "", perl = TRUE), silent = TRUE)), USE.NAMES = FALSE) regex_at_all & regex_valid diff --git a/data-raw/AMR_latest.tar.gz b/data-raw/AMR_latest.tar.gz index 400006f7..230ebdb5 100644 Binary files a/data-raw/AMR_latest.tar.gz and b/data-raw/AMR_latest.tar.gz differ diff --git a/docs/404.html b/docs/404.html index c10270ff..8467be66 100644 --- a/docs/404.html +++ b/docs/404.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 008229c2..f5022a8d 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005 diff --git a/docs/articles/index.html b/docs/articles/index.html index 9bd73509..ad8d4272 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005 diff --git a/docs/authors.html b/docs/authors.html index 238fbb91..915093b5 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005 diff --git a/docs/index.html b/docs/index.html index ac15e3ae..396c037f 100644 --- a/docs/index.html +++ b/docs/index.html @@ -42,7 +42,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005 diff --git a/docs/news/index.html b/docs/news/index.html index f4dfe403..d0e0ca06 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005 @@ -236,9 +236,9 @@ Source: NEWS.md -
-

-AMR 1.6.0.9004 Unreleased +
+

+AMR 1.6.0.9005 Unreleased

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 1031ab5e..524f89df 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -12,7 +12,7 @@ articles: datasets: datasets.html resistance_predict: resistance_predict.html welcome_to_AMR: welcome_to_AMR.html -last_built: 2021-04-16T10:00Z +last_built: 2021-04-16T11:03Z urls: reference: https://msberends.github.io/AMR//reference article: https://msberends.github.io/AMR//articles diff --git a/docs/reference/index.html b/docs/reference/index.html index d3b11412..2d4688b7 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005

diff --git a/docs/survey.html b/docs/survey.html index 44d3120f..12b09af1 100644 --- a/docs/survey.html +++ b/docs/survey.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9004 + 1.6.0.9005