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MDRO, freq tables, new print format for tibbles

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dr. M.S. (Matthijs) Berends
2018-04-18 12:24:54 +02:00
parent 3165c50d06
commit 2509e2413d
23 changed files with 1453 additions and 85 deletions
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20
NAMESPACE
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@ -7,11 +7,18 @@ S3method(barplot,mic)
S3method(barplot,rsi)
S3method(plot,mic)
S3method(plot,rsi)
S3method(print,data.table)
S3method(print,mic)
S3method(print,rsi)
S3method(print,tbl)
S3method(print,tbl_df)
S3method(summary,mic)
S3method(summary,rsi)
export("%like%")
export(BRMO)
export(EUCAST_rules)
export(MDRO)
export(MRGN)
export(abname)
export(anti_join_microorganisms)
export(as.mic)
@ -20,6 +27,8 @@ export(atc_property)
export(clipboard_export)
export(clipboard_import)
export(first_isolate)
export(freq)
export(frequency_tbl)
export(full_join_microorganisms)
export(guess_bactid)
export(inner_join_microorganisms)
@ -41,8 +50,11 @@ exportMethods(barplot.mic)
exportMethods(barplot.rsi)
exportMethods(plot.mic)
exportMethods(plot.rsi)
exportMethods(print.data.table)
exportMethods(print.mic)
exportMethods(print.rsi)
exportMethods(print.tbl)
exportMethods(print.tbl_df)
exportMethods(summary.mic)
exportMethods(summary.rsi)
importFrom(dplyr,"%>%")
@ -52,15 +64,19 @@ importFrom(dplyr,arrange)
importFrom(dplyr,arrange_at)
importFrom(dplyr,as_tibble)
importFrom(dplyr,between)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,filter_at)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_at)
importFrom(dplyr,group_size)
importFrom(dplyr,group_vars)
importFrom(dplyr,if_else)
importFrom(dplyr,lag)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n_distinct)
importFrom(dplyr,n_groups)
importFrom(dplyr,progress_estimated)
importFrom(dplyr,pull)
importFrom(dplyr,row_number)
@ -69,6 +85,7 @@ importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,tibble)
importFrom(dplyr,vars)
importFrom(grDevices,boxplot.stats)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,plot)
@ -76,6 +93,9 @@ importFrom(graphics,text)
importFrom(reshape2,dcast)
importFrom(rvest,html_nodes)
importFrom(rvest,html_table)
importFrom(stats,fivenum)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(utils,object.size)
importFrom(utils,packageDescription)
importFrom(utils,read.delim)