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(v0.7.0.9008) T. vaginalis, rsi_df

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dr. M.S. (Matthijs) Berends
2019-06-13 14:28:46 +02:00
parent 699e87ab4a
commit 254745061c
32 changed files with 382 additions and 259 deletions
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R/data.R
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@ -55,7 +55,7 @@
#'
#' A data set containing the microbial taxonomy of six kingdoms from the Catalogue of Life. MO codes can be looked up using \code{\link{as.mo}}.
#' @inheritSection catalogue_of_life Catalogue of Life
#' @format A \code{\link{data.frame}} with 67,903 observations and 16 variables:
#' @format A \code{\link{data.frame}} with 67,906 observations and 16 variables:
#' \describe{
#' \item{\code{mo}}{ID of microorganism as used by this package}
#' \item{\code{col_id}}{Catalogue of Life ID}
@ -69,9 +69,10 @@
#' }
#' @details Manually added were:
#' \itemize{
#' \item{9 species of \emph{Streptococcus} (beta haemolytic groups A, B, C, D, F, G, H, K and unspecified)}
#' \item{2 species of \emph{Staphylococcus} (coagulase-negative [CoNS] and coagulase-positive [CoPS])}
#' \item{3 other undefined (unknown, unknown Gram negatives and unknown Gram positives)}
#' \item{9 entries of \emph{Streptococcus} (beta haemolytic groups A, B, C, D, F, G, H, K and unspecified)}
#' \item{2 entries of \emph{Staphylococcus} (coagulase-negative [CoNS] and coagulase-positive [CoPS])}
#' \item{3 entries of Trichomonas (Trichomonas vaginalis, and its family and genus)}
#' \item{3 other 'undefined' entries (unknown, unknown Gram negatives and unknown Gram positives)}
#' \item{8,830 species from the DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) that are not in the Catalogue of Life}
#' }
#' @section About the records from DSMZ (see source):