EUCAST expert rules in antimicrobial susceptibility test
To define antibiotics column names, leave as it is to determine it automatically with guess_ab_col()
or input a text (case-insensitive), or use NULL
to skip a column (e.g. TIC = NULL
to skip ticarcillin). Manually defined but non-existing columns will be skipped with a warning.
The following antibiotics are eligible for the functions eucast_rules()
and mdro()
. These are shown below in the format 'name (antimicrobial ID
, ATC code)', sorted alphabetically:
-Amikacin (AMK
, J01GB06), amoxicillin (AMX
, J01CA04), amoxicillin/clavulanic acid (AMC
, J01CR02), ampicillin (AMP
, J01CA01), ampicillin/sulbactam (SAM
, J01CR01), apramycin (APR
, QA07AA92), arbekacin (ARB
, J01GB12), aspoxicillin (APX
, J01CA19), azidocillin (AZD
, J01CE04), azithromycin (AZM
, J01FA10), azlocillin (AZL
, J01CA09), aztreonam (ATM
, J01DF01), bacampicillin (BAM
, J01CA06), bekanamycin (BEK
, J01GB13), benzathine benzylpenicillin (BNB
, J01CE08), benzathine phenoxymethylpenicillin (BNP
, J01CE10), benzylpenicillin (PEN
, J01CE01), besifloxacin (BES
, S01AE08), biapenem (BIA
, J01DH05), carbenicillin (CRB
, J01CA03), carindacillin (CRN
, J01CA05), cefacetrile (CAC
, J01DB10), cefaclor (CEC
, J01DC04), cefadroxil (CFR
, J01DB05), cefalexin (LEX
, J01DB01), cefaloridine (RID
, J01DB02), cefalotin (CEP
, J01DB03), cefamandole (MAN
, J01DC03), cefapirin (HAP
, J01DB08), cefatrizine (CTZ
, J01DB07), cefazedone (CZD
, J01DB06), cefazolin (CZO
, J01DB04), cefcapene (CCP
, J01DD17), cefdinir (CDR
, J01DD15), cefditoren (DIT
, J01DD16), cefepime (FEP
, J01DE01), cefetamet (CAT
, J01DD10), cefixime (CFM
, J01DD08), cefmenoxime (CMX
, J01DD05), cefmetazole (CMZ
, J01DC09), cefodizime (DIZ
, J01DD09), cefonicid (CID
, J01DC06), cefoperazone (CFP
, J01DD12), cefoperazone/sulbactam (CSL
, J01DD62), ceforanide (CND
, J01DC11), cefotaxime (CTX
, J01DD01), cefotaxime/clavulanic acid (CTC
, J01DD51), cefotetan (CTT
, J01DC05), cefotiam (CTF
, J01DC07), cefovecin (FOV
, QJ01DD91), cefoxitin (FOX
, J01DC01), cefozopran (ZOP
, J01DE03), cefpiramide (CPM
, J01DD11), cefpirome (CPO
, J01DE02), cefpodoxime (CPD
, J01DD13), cefprozil (CPR
, J01DC10), cefquinome (CEQ
, QG51AA07), cefroxadine (CRD
, J01DB11), cefsulodin (CFS
, J01DD03), ceftaroline (CPT
, J01DI02), ceftazidime (CAZ
, J01DD02), ceftazidime/clavulanic acid (CCV
, J01DD52), cefteram (CEM
, J01DD18), ceftezole (CTL
, J01DB12), ceftibuten (CTB
, J01DD14), ceftiofur (TIO
, QJ01DD90), ceftizoxime (CZX
, J01DD07), ceftobiprole medocaril (CFM1
, J01DI01), ceftolozane/tazobactam (CZT
, J01DI54), ceftriaxone (CRO
, J01DD04), ceftriaxone/beta-lactamase inhibitor (CEB
, J01DD63), cefuroxime (CXM
, J01DC02), cephradine (CED
, J01DB09), chloramphenicol (CHL
, J01BA01), ciprofloxacin (CIP
, J01MA02), clarithromycin (CLR
, J01FA09), clindamycin (CLI
, J01FF01), clometocillin (CLM
, J01CE07), cloxacillin (CLO
, J01CF02), colistin (COL
, J01XB01), cycloserine (CYC
, J04AB01), dalbavancin (DAL
, J01XA04), danofloxacin (DAN
, QJ01MA92), daptomycin (DAP
, J01XX09), delafloxacin (DFX
, J01MA23), dibekacin (DKB
, J01GB09), dicloxacillin (DIC
, J01CF01), difloxacin (DIF
, QJ01MA94), dirithromycin (DIR
, J01FA13), doripenem (DOR
, J01DH04), doxycycline (DOX
, J01AA02), enoxacin (ENX
, J01MA04), enrofloxacin (ENR
, QJ01MA90), epicillin (EPC
, J01CA07), ertapenem (ETP
, J01DH03), erythromycin (ERY
, J01FA01), fleroxacin (FLE
, J01MA08), flucloxacillin (FLC
, J01CF05), flurithromycin (FLR1
, J01FA14), fosfomycin (FOS
, J01XX01), framycetin (FRM
, D09AA01), fusidic acid (FUS
, J01XC01), gamithromycin (GAM
, QJ01FA95), garenoxacin (GRN
, J01MA19), gatifloxacin (GAT
, J01MA16), gemifloxacin (GEM
, J01MA15), gentamicin (GEN
, J01GB03), grepafloxacin (GRX
, J01MA11), hetacillin (HET
, J01CA18), imipenem (IPM
, J01DH51), imipenem/relebactam (IMR
, J01DH56), isepamicin (ISE
, J01GB11), josamycin (JOS
, J01FA07), kanamycin (KAN
, J01GB04), kitasamycin (KIT
, QJ01FA93), lascufloxacin (LSC
, J01MA25), latamoxef (LTM
, J01DD06), levofloxacin (LVX
, J01MA12), levonadifloxacin (LND
, J01MA24), lincomycin (LIN
, J01FF02), linezolid (LNZ
, J01XX08), lomefloxacin (LOM
, J01MA07), loracarbef (LOR
, J01DC08), marbofloxacin (MAR
, QJ01MA93), mecillinam (MEC
, J01CA11), meropenem (MEM
, J01DH02), meropenem/vaborbactam (MEV
, J01DH52), metampicillin (MTM
, J01CA14), meticillin (MET
, J01CF03), mezlocillin (MEZ
, J01CA10), micronomicin (MCR
, S01AA22), midecamycin (MID
, J01FA03), minocycline (MNO
, J01AA08), miocamycin (MCM
, J01FA11), moxifloxacin (MFX
, J01MA14), nadifloxacin (NAD
, D10AF05), nafcillin (NAF
, J01CF06), nalidixic acid (NAL
, J01MB02), neomycin (NEO
, J01GB05), netilmicin (NET
, J01GB07), nitrofurantoin (NIT
, J01XE01), norfloxacin (NOR
, J01MA06), novobiocin (NOV
, QJ01XX95), ofloxacin (OFX
, J01MA01), oleandomycin (OLE
, J01FA05), orbifloxacin (ORB
, QJ01MA95), oritavancin (ORI
, J01XA05), oxacillin (OXA
, J01CF04), panipenem (PAN
, J01DH55), pazufloxacin (PAZ
, J01MA18), pefloxacin (PEF
, J01MA03), penamecillin (PNM
, J01CE06), pheneticillin (PHE
, J01CE05), phenoxymethylpenicillin (PHN
, J01CE02), piperacillin (PIP
, J01CA12), piperacillin/tazobactam (TZP
, J01CR05), pirlimycin (PRL
, QJ51FF90), pivampicillin (PVM
, J01CA02), pivmecillinam (PME
, J01CA08), plazomicin (PLZ
, J01GB14), polymyxin B (PLB
, J01XB02), pradofloxacin (PRA
, QJ01MA97), pristinamycin (PRI
, J01FG01), procaine benzylpenicillin (PRB
, J01CE09), propicillin (PRP
, J01CE03), prulifloxacin (PRU
, J01MA17), quinupristin/dalfopristin (QDA
, QJ01FG02), ribostamycin (RST
, J01GB10), rifampicin (RIF
, J04AB02), rokitamycin (ROK
, J01FA12), roxithromycin (RXT
, J01FA06), rufloxacin (RFL
, J01MA10), sarafloxacin (SAR
, QJ01MA98), sisomicin (SIS
, J01GB08), sitafloxacin (SIT
, J01MA21), solithromycin (SOL
, J01FA16), sparfloxacin (SPX
, J01MA09), spiramycin (SPI
, J01FA02), streptoduocin (STR
, J01GA02), streptomycin (STR1
, J01GA01), sulbactam (SUL
, J01CG01), sulbenicillin (SBC
, J01CA16), sulfadiazine (SDI
, J01EC02), sulfadiazine/trimethoprim (SLT1
, J01EE02), sulfadimethoxine (SUD
, J01ED01), sulfadimidine (SDM
, J01EB03), sulfadimidine/trimethoprim (SLT2
, J01EE05), sulfafurazole (SLF
, J01EB05), sulfaisodimidine (SLF1
, J01EB01), sulfalene (SLF2
, J01ED02), sulfamazone (SZO
, J01ED09), sulfamerazine (SLF3
, J01ED07), sulfamerazine/trimethoprim (SLT3
, J01EE07), sulfamethizole (SLF4
, J01EB02), sulfamethoxazole (SMX
, J01EC01), sulfamethoxypyridazine (SLF5
, J01ED05), sulfametomidine (SLF6
, J01ED03), sulfametoxydiazine (SLF7
, J01ED04), sulfametrole/trimethoprim (SLT4
, J01EE03), sulfamoxole (SLF8
, J01EC03), sulfamoxole/trimethoprim (SLT5
, J01EE04), sulfanilamide (SLF9
, J01EB06), sulfaperin (SLF10
, J01ED06), sulfaphenazole (SLF11
, J01ED08), sulfapyridine (SLF12
, J01EB04), sulfathiazole (SUT
, J01EB07), sulfathiourea (SLF13
, J01EB08), sultamicillin (SLT6
, J01CR04), talampicillin (TAL
, J01CA15), tazobactam (TAZ
, J01CG02), tebipenem (TBP
, J01DH06), tedizolid (TZD
, J01XX11), teicoplanin (TEC
, J01XA02), telavancin (TLV
, J01XA03), telithromycin (TLT
, J01FA15), temafloxacin (TMX
, J01MA05), temocillin (TEM
, J01CA17), tetracycline (TCY
, J01AA07), ticarcillin (TIC
, J01CA13), ticarcillin/clavulanic acid (TCC
, J01CR03), tigecycline (TGC
, J01AA12), tilbroquinol (TBQ
, P01AA05), tildipirosin (TIP
, QJ01FA96), tilmicosin (TIL
, QJ01FA91), tobramycin (TOB
, J01GB01), tosufloxacin (TFX
, J01MA22), trimethoprim (TMP
, J01EA01), trimethoprim/sulfamethoxazole (SXT
, J01EE01), troleandomycin (TRL
, J01FA08), trovafloxacin (TVA
, J01MA13), tulathromycin (TUL
, QJ01FA94), tylosin (TYL
, QJ01FA90), tylvalosin (TYL1
, QJ01FA92), vancomycin (VAN
, J01XA01)
+Amikacin (AMK
, J01GB06), amoxicillin (AMX
, J01CA04), amoxicillin/clavulanic acid (AMC
, J01CR02), ampicillin (AMP
, J01CA01), ampicillin/sulbactam (SAM
, J01CR01), apramycin (APR
, QA07AA92), arbekacin (ARB
, J01GB12), aspoxicillin (APX
, J01CA19), azidocillin (AZD
, J01CE04), azithromycin (AZM
, J01FA10), azlocillin (AZL
, J01CA09), aztreonam (ATM
, J01DF01), bacampicillin (BAM
, J01CA06), bekanamycin (BEK
, J01GB13), benzathine benzylpenicillin (BNB
, J01CE08), benzathine phenoxymethylpenicillin (BNP
, J01CE10), benzylpenicillin (PEN
, J01CE01), besifloxacin (BES
, S01AE08), biapenem (BIA
, J01DH05), carbenicillin (CRB
, J01CA03), carindacillin (CRN
, J01CA05), cefacetrile (CAC
, J01DB10), cefaclor (CEC
, J01DC04), cefadroxil (CFR
, J01DB05), cefalexin (LEX
, J01DB01), cefaloridine (RID
, J01DB02), cefalotin (CEP
, J01DB03), cefamandole (MAN
, J01DC03), cefapirin (HAP
, J01DB08), cefatrizine (CTZ
, J01DB07), cefazedone (CZD
, J01DB06), cefazolin (CZO
, J01DB04), cefcapene (CCP
, J01DD17), cefdinir (CDR
, J01DD15), cefditoren (DIT
, J01DD16), cefepime (FEP
, J01DE01), cefetamet (CAT
, J01DD10), cefiderocol (FDC
, J01DI04), cefixime (CFM
, J01DD08), cefmenoxime (CMX
, J01DD05), cefmetazole (CMZ
, J01DC09), cefodizime (DIZ
, J01DD09), cefonicid (CID
, J01DC06), cefoperazone (CFP
, J01DD12), cefoperazone/sulbactam (CSL
, J01DD62), ceforanide (CND
, J01DC11), cefotaxime (CTX
, J01DD01), cefotaxime/clavulanic acid (CTC
, J01DD51), cefotetan (CTT
, J01DC05), cefotiam (CTF
, J01DC07), cefovecin (FOV
, QJ01DD91), cefoxitin (FOX
, J01DC01), cefozopran (ZOP
, J01DE03), cefpiramide (CPM
, J01DD11), cefpirome (CPO
, J01DE02), cefpodoxime (CPD
, J01DD13), cefprozil (CPR
, J01DC10), cefquinome (CEQ
, QG51AA07), cefroxadine (CRD
, J01DB11), cefsulodin (CFS
, J01DD03), ceftaroline (CPT
, J01DI02), ceftazidime (CAZ
, J01DD02), ceftazidime/clavulanic acid (CCV
, J01DD52), cefteram (CEM
, J01DD18), ceftezole (CTL
, J01DB12), ceftibuten (CTB
, J01DD14), ceftiofur (TIO
, QJ01DD90), ceftizoxime (CZX
, J01DD07), ceftobiprole medocaril (CFM1
, J01DI01), ceftolozane/tazobactam (CZT
, J01DI54), ceftriaxone (CRO
, J01DD04), ceftriaxone/beta-lactamase inhibitor (CEB
, J01DD63), cefuroxime (CXM
, J01DC02), cephradine (CED
, J01DB09), chloramphenicol (CHL
, J01BA01), ciprofloxacin (CIP
, J01MA02), clarithromycin (CLR
, J01FA09), clindamycin (CLI
, J01FF01), clometocillin (CLM
, J01CE07), cloxacillin (CLO
, J01CF02), colistin (COL
, J01XB01), cycloserine (CYC
, J04AB01), dalbavancin (DAL
, J01XA04), danofloxacin (DAN
, QJ01MA92), daptomycin (DAP
, J01XX09), delafloxacin (DFX
, J01MA23), dibekacin (DKB
, J01GB09), dicloxacillin (DIC
, J01CF01), difloxacin (DIF
, QJ01MA94), dirithromycin (DIR
, J01FA13), doripenem (DOR
, J01DH04), doxycycline (DOX
, J01AA02), enoxacin (ENX
, J01MA04), enrofloxacin (ENR
, QJ01MA90), epicillin (EPC
, J01CA07), ertapenem (ETP
, J01DH03), erythromycin (ERY
, J01FA01), fleroxacin (FLE
, J01MA08), flucloxacillin (FLC
, J01CF05), flurithromycin (FLR1
, J01FA14), fosfomycin (FOS
, J01XX01), framycetin (FRM
, D09AA01), fusidic acid (FUS
, J01XC01), gamithromycin (GAM
, QJ01FA95), garenoxacin (GRN
, J01MA19), gatifloxacin (GAT
, J01MA16), gemifloxacin (GEM
, J01MA15), gentamicin (GEN
, J01GB03), grepafloxacin (GRX
, J01MA11), hetacillin (HET
, J01CA18), imipenem (IPM
, J01DH51), imipenem/relebactam (IMR
, J01DH56), isepamicin (ISE
, J01GB11), josamycin (JOS
, J01FA07), kanamycin (KAN
, J01GB04), kitasamycin (KIT
, QJ01FA93), lascufloxacin (LSC
, J01MA25), latamoxef (LTM
, J01DD06), levofloxacin (LVX
, J01MA12), levonadifloxacin (LND
, J01MA24), lincomycin (LIN
, J01FF02), linezolid (LNZ
, J01XX08), lomefloxacin (LOM
, J01MA07), loracarbef (LOR
, J01DC08), marbofloxacin (MAR
, QJ01MA93), mecillinam (MEC
, J01CA11), meropenem (MEM
, J01DH02), meropenem/vaborbactam (MEV
, J01DH52), metampicillin (MTM
, J01CA14), meticillin (MET
, J01CF03), mezlocillin (MEZ
, J01CA10), micronomicin (MCR
, S01AA22), midecamycin (MID
, J01FA03), minocycline (MNO
, J01AA08), miocamycin (MCM
, J01FA11), moxifloxacin (MFX
, J01MA14), nadifloxacin (NAD
, D10AF05), nafcillin (NAF
, J01CF06), nalidixic acid (NAL
, J01MB02), neomycin (NEO
, J01GB05), netilmicin (NET
, J01GB07), nitrofurantoin (NIT
, J01XE01), norfloxacin (NOR
, J01MA06), novobiocin (NOV
, QJ01XX95), ofloxacin (OFX
, J01MA01), oleandomycin (OLE
, J01FA05), orbifloxacin (ORB
, QJ01MA95), oritavancin (ORI
, J01XA05), oxacillin (OXA
, J01CF04), panipenem (PAN
, J01DH55), pazufloxacin (PAZ
, J01MA18), pefloxacin (PEF
, J01MA03), penamecillin (PNM
, J01CE06), pheneticillin (PHE
, J01CE05), phenoxymethylpenicillin (PHN
, J01CE02), piperacillin (PIP
, J01CA12), piperacillin/tazobactam (TZP
, J01CR05), pirlimycin (PRL
, QJ51FF90), pivampicillin (PVM
, J01CA02), pivmecillinam (PME
, J01CA08), plazomicin (PLZ
, J01GB14), polymyxin B (PLB
, J01XB02), pradofloxacin (PRA
, QJ01MA97), pristinamycin (PRI
, J01FG01), procaine benzylpenicillin (PRB
, J01CE09), propicillin (PRP
, J01CE03), prulifloxacin (PRU
, J01MA17), quinupristin/dalfopristin (QDA
, QJ01FG02), ribostamycin (RST
, J01GB10), rifampicin (RIF
, J04AB02), rokitamycin (ROK
, J01FA12), roxithromycin (RXT
, J01FA06), rufloxacin (RFL
, J01MA10), sarafloxacin (SAR
, QJ01MA98), sisomicin (SIS
, J01GB08), sitafloxacin (SIT
, J01MA21), solithromycin (SOL
, J01FA16), sparfloxacin (SPX
, J01MA09), spiramycin (SPI
, J01FA02), streptoduocin (STR
, J01GA02), streptomycin (STR1
, J01GA01), sulbactam (SUL
, J01CG01), sulbenicillin (SBC
, J01CA16), sulfadiazine (SDI
, J01EC02), sulfadiazine/trimethoprim (SLT1
, J01EE02), sulfadimethoxine (SUD
, J01ED01), sulfadimidine (SDM
, J01EB03), sulfadimidine/trimethoprim (SLT2
, J01EE05), sulfafurazole (SLF
, J01EB05), sulfaisodimidine (SLF1
, J01EB01), sulfalene (SLF2
, J01ED02), sulfamazone (SZO
, J01ED09), sulfamerazine (SLF3
, J01ED07), sulfamerazine/trimethoprim (SLT3
, J01EE07), sulfamethizole (SLF4
, J01EB02), sulfamethoxazole (SMX
, J01EC01), sulfamethoxypyridazine (SLF5
, J01ED05), sulfametomidine (SLF6
, J01ED03), sulfametoxydiazine (SLF7
, J01ED04), sulfametrole/trimethoprim (SLT4
, J01EE03), sulfamoxole (SLF8
, J01EC03), sulfamoxole/trimethoprim (SLT5
, J01EE04), sulfanilamide (SLF9
, J01EB06), sulfaperin (SLF10
, J01ED06), sulfaphenazole (SLF11
, J01ED08), sulfapyridine (SLF12
, J01EB04), sulfathiazole (SUT
, J01EB07), sulfathiourea (SLF13
, J01EB08), sultamicillin (SLT6
, J01CR04), talampicillin (TAL
, J01CA15), tazobactam (TAZ
, J01CG02), tebipenem (TBP
, J01DH06), tedizolid (TZD
, J01XX11), teicoplanin (TEC
, J01XA02), telavancin (TLV
, J01XA03), telithromycin (TLT
, J01FA15), temafloxacin (TMX
, J01MA05), temocillin (TEM
, J01CA17), tetracycline (TCY
, J01AA07), ticarcillin (TIC
, J01CA13), ticarcillin/clavulanic acid (TCC
, J01CR03), tigecycline (TGC
, J01AA12), tilbroquinol (TBQ
, P01AA05), tildipirosin (TIP
, QJ01FA96), tilmicosin (TIL
, QJ01FA91), tobramycin (TOB
, J01GB01), tosufloxacin (TFX
, J01MA22), trimethoprim (TMP
, J01EA01), trimethoprim/sulfamethoxazole (SXT
, J01EE01), troleandomycin (TRL
, J01FA08), trovafloxacin (TVA
, J01MA13), tulathromycin (TUL
, QJ01FA94), tylosin (TYL
, QJ01FA90), tylvalosin (TYL1
, QJ01FA92), vancomycin (VAN
, J01XA01)