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rlang dependency, new fungi

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-02-28 13:56:28 +01:00
parent cf3bdb54c7
commit 2565b60024
86 changed files with 762 additions and 705 deletions
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7
tests/testthat/test-mo.R
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@ -193,11 +193,7 @@ test_that("as.mo works", {
# check old names
expect_equal(suppressMessages(as.character(as.mo("Escherichia blattae"))), "B_SHMWL_BLA")
# # - Didymosphaeria spartinae (unprevalent)
# expect_warning(suppressMessages(as.mo("D spartin", allow_uncertain = TRUE)))
# # - was renamed to Leptosphaeria obiones
# expect_equal(suppressWarnings(suppressMessages(as.character(as.mo("D spartin", allow_uncertain = TRUE)))),
# "F_LPTSP_OBI")
print(mo_renamed())
# check uncertain names
expect_equal(suppressWarnings(as.character(as.mo("esco extra_text", allow_uncertain = FALSE))), NA_character_)
@ -234,6 +230,7 @@ test_that("as.mo works", {
"Streptococcus suis (bovis gr)",
"Raoultella (here some text) terrigena")))),
c("B_MCRBC", "B_STRPT_SUI", "B_RLTLL_TER"))
print(mo_uncertainties())
# Salmonella (City) are all actually Salmonella enterica spp (City)
expect_equal(as.character(suppressMessages(as.mo("Salmonella Goettingen"))),