mirror of
https://github.com/msberends/AMR.git
synced 2025-07-09 21:01:58 +02:00
Built site for AMR: 1.8.2.9126@fe41fc2
This commit is contained in:
github-actions
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9125</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9126</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -193,43 +193,42 @@
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.002 256 256 1 4 32 0.002 256 0.5 0.001 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 2 0.5 0.002 0.25 64 0.001 8 1 0.025 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 4 0.025 8 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.025 0.01 <=0.001 16 64 0.025 0.125 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.025 16 0.5 >=256 2 64 32 4 0.005 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 128 0.5 8 0.25 0.002 0.005 </span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 45 39 38 39 45 40 12 49 22 43 44 20 18 8 50 40 49 22 15 22 38 45 12 49 41</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 20 15 10 41 49 47 42 39 8 46 10 7 17 10 27 22 27 23 11 9 36 14 29 26 16</span>
|
||||
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] R R S I I S R R I I R S I S I I I I I I S I S R I</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] S I R I S I S R R I I I S I I R S I R R R R S S I</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.01 0.0625 0.005 <=0.001 1 <=0.001 1 0.01 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 0.5 2 16 16 8 0.0625 32 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 4 0.002 0.25 0.005 0.0625 0.025 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.005 0.25 0.0625 0.001 0.5 16 0.25 0.0625 0.001 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.001 0.001 0.25 2 0.0625 32 4 0.125 0.0625 64 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 32 >=128 0.125 0.0625 64 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.25 >=32 0.25 1 4 1 16 8 8 8 0.25 1 0.25 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [16] 2 2 4 8 >=32 0.25 >=32 >=32 >=32 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] >=16 >=16 1 >=16 2 1 1 1 1 2 8 >=16 2 8 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [16] 2 4 8 >=16 8 2 4 8 2 8 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 2 1 0.5 0.25 0.125 0.5 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [9] 1 0.5 1 0.5 1 1 2 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [17] 0.125 0.25 0.125 0.5 0.5 0.25 <=0.0625 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 0.25 1 2 2 4 0.0625 0.5 0.0625</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 2 0.25 0.25 4 1 0.125 1 0.0625 0.125 0.0625</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 2 0.5 0.0625 0.5 0.5 </span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 38 43 19 13 42 30 49 18 45 41 11 27 48 9 34 45 49 48 10 11 43 11 46 47 47</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 12 17 49 8 49 22 13 47 28 44 43 20 23 45 41 39 50 30 45 48 16 15 40 34 47</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 12 15 16 17 11 12 15 14 14 16 15 14 15 15 14 14 12 11 12 17 14 16 12 14 14</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 17 17 11 16 12 15 16 16 16 13 12 11 12 16 15 14 16 12 15 13 11 11 17 14 14</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 18 27 20 17 17 16 23 17 15 20 25 16 16 21 26 18 22 20 24 18 26 21 20 19 18</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 25 17 24 23 17 20 20 19 22 24 25 20 23 21 21 24 18 21 24 17 21 27 21 16 16</span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
||||
Reference in New Issue
Block a user