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support for old rsi arguments

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dr. M.S. (Matthijs) Berends
2023-03-11 14:24:34 +01:00
parent 4416394e10
commit 262598b8d7
21 changed files with 327 additions and 199 deletions
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R/eucast_rules.R
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@ -181,6 +181,7 @@ eucast_rules <- function(x,
meet_criteria(ampc_cephalosporin_resistance, allow_class = c("logical", "character", "sir"), has_length = 1, allow_NA = TRUE, allow_NULL = TRUE)
meet_criteria(only_sir_columns, allow_class = "logical", has_length = 1)
meet_criteria(custom_rules, allow_class = "custom_eucast_rules", allow_NULL = TRUE)
if ("only_rsi_columns" %in% names(list(...))) only_sir_columns <- list(...)$only_rsi_columns
add_MO_lookup_to_AMR_env()