support for old rsi arguments

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dr. M.S. (Matthijs) Berends committed 2023-03-11 14:24:34 +01:00
1 parent 4416394e10
commit 262598b8d7
21 files changed
+327 -199

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@@ -1366,8 +1366,10 @@ microorganisms <- taxonomy
# https://lpsn.dsmz.de/species/stenotrophomonas-maltophilia
# all MO's to keep as 'accepted', not as 'synonym':
to_restore <- c("Stenotrophomonas maltophilia",
"Moraxella catarrhalis")
to_restore <- c(
"Stenotrophomonas maltophilia",
"Moraxella catarrhalis"
)
all(to_restore %in% microorganisms$fullname)
for (nm in to_restore) {
microorganisms$lpsn_renamed_to[which(microorganisms$fullname == nm)] <- NA