P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-04-04 20:15:55 +02:00
Code Releases Activity

(v3.0.1.9042) add EUCAST breakpoint table v16 to interpretive_rules()

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2026-04-02 11:42:19 +02:00
parent 3a736bc484
commit 26613d774b
33 changed files with 1765 additions and 1584 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
R/amr_selectors.R
View File

@@ -857,7 +857,7 @@ all_any_amr_selector <- function(type, ..., na.rm = TRUE) {
cols_ab <- c(...)
result <- cols_ab[toupper(cols_ab) %in% VALID_SIR_LEVELS]
if (length(result) == 0) {
message_("Filtering ", type, " of columns ", vector_and(font_bold(cols_ab, collapse = NULL), quotes = "'"), ' to contain value "S", "I" or "R"')
message_("Filtering ", type, " of columns ", vector_and(paste0("{.field ", font_bold(cols_ab, collapse = NULL), "}"), quotes = FALSE), " to only contain values ", vector_or(VALID_SIR_LEVELS))
result <- VALID_SIR_LEVELS
}
cols_ab <- cols_ab[!cols_ab %in% result]