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mirror of https://github.com/msberends/AMR.git synced 2025-09-07 02:49:38 +02:00

(v0.8.0.9033) antivirals data set, cleanup

This commit is contained in:
2019-11-18 12:10:47 +01:00
parent 67f3f4387b
commit 267320f15f
97 changed files with 1131 additions and 644 deletions

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@@ -184,21 +184,16 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
}
\examples{
\donttest{
library(dplyr)
example_isolates \%>\%
mdro() \%>\%
freq()
\donttest{
example_isolates \%>\%
mutate(EUCAST = eucast_exceptional_phenotypes(.),
BRMO = brmo(.),
MRGN = mrgn(.))
example_isolates \%>\%
rename(PIP = TZP) \%>\% # no piperacillin, so take piperacillin/tazobactam
mrgn() \%>\% # check German guideline
freq() # check frequencies
}
}