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unit tests

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This commit is contained in:
dr. M.S. (Matthijs) Berends 2023-01-05 18:21:48 +01:00
parent 5361c0b2a0
commit 268ec31d92
6 changed files with 15 additions and 8 deletions
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2
.github/workflows/check-old.yaml vendored
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@ -129,7 +129,7 @@ jobs:
R CMD check --as-cran --no-manual --run-donttest --run-dontrun AMR_*.tar.gz R CMD check --as-cran --no-manual --run-donttest --run-dontrun AMR_*.tar.gz
shell: bash shell: bash
- name: Show unit tests output - name: Show tinytest output
if: always() if: always()
run: | run: |
cd ../AMR.Rcheck cd ../AMR.Rcheck

7
.github/workflows/check-recent.yaml vendored
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@ -96,3 +96,10 @@ jobs:
# during 'R CMD check', R_LIBS_USER will be overwritten, so: # during 'R CMD check', R_LIBS_USER will be overwritten, so:
R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }} R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
R_RUN_TINYTEST: true R_RUN_TINYTEST: true
- name: Show tinytest output
if: always()
run: |
cd ../AMR.Rcheck
find . -name 'tinytest.Rout*' -exec cat '{}' \; ||>
shell: bash

2
DESCRIPTION
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@ -1,5 +1,5 @@
Package: AMR Package: AMR
Version: 1.8.2.9080 Version: 1.8.2.9081
Date: 2023-01-05 Date: 2023-01-05
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)

2
NEWS.md
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@ -1,4 +1,4 @@
# AMR 1.8.2.9080 # AMR 1.8.2.9081
*(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)* *(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)*

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R/sysdata.rda
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2
man/g.test.Rd
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@ -21,7 +21,7 @@ g.test(x, y = NULL, p = rep(1/length(x), length(x)), rescale.p = FALSE)
\item{y}{a numeric vector; ignored if \code{x} is a matrix. If \item{y}{a numeric vector; ignored if \code{x} is a matrix. If
\code{x} is a factor, \code{y} should be a factor of the same length.} \code{x} is a factor, \code{y} should be a factor of the same length.}
\item{p}{a vector of probabilities of the same length of \code{x}. \item{p}{a vector of probabilities of the same length as \code{x}.
An error is given if any entry of \code{p} is negative.} An error is given if any entry of \code{p} is negative.}
\item{rescale.p}{a logical scalar; if TRUE then \code{p} is rescaled \item{rescale.p}{a logical scalar; if TRUE then \code{p} is rescaled