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fixes for microorganisms.codes

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dr. M.S. (Matthijs) Berends
2019-05-28 16:50:40 +02:00
parent 7e0e171512
commit 27380fa021
73 changed files with 679 additions and 412 deletions
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NEWS.md
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@ -28,13 +28,15 @@
* Frequency tables (`freq()`):
* speed improvement for microbial IDs
* fixed level names in markdown
*
* Removed all hardcoded EUCAST rules and replaced them with a new reference file: `./inst/eucast/eucast.tsv`
* Added ceftazidim intrinsic resistance to *Streptococci*
* Changed default settings for `age_groups()`, to let groups of fives and tens end with 100+ instead of 120+
* Fix for `freq()` for when all values are `NA`
* Fix for `first_isolate()` for when dates are missing
* Improved speed of `guess_ab_col()`
* Function `as.mo()` now gently interprets any number of whitespace characters (like tabs) as one space
* Small algorithm fix for `as.mo()`
* Removed viruses from data set `microorganisms.codes` and cleaned it up
#### Other
* Support for R 3.6.0