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(v1.2.0.9022) as.ab() improvement

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dr. M.S. (Matthijs) Berends
2020-07-01 16:21:36 +02:00
parent afc660dc33
commit 298e67a45b
15 changed files with 84 additions and 29 deletions
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NEWS.md
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# AMR 1.2.0.9021
# AMR 1.2.0.9022
## <small>Last updated: 01-Jul-2020</small>
### New
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### Changed
* Using unexisting columns in all `count_*()`, `proportion_*()`, `susceptibility()` and `resistance()` functions wil now return an error instead of dropping them silently
* Improvements for `as.ab()`:
* Dramatic improvement of the algorithm behind `as.ab()`, making many more input errors translatable like from digitalised health care records, using too few or too many vowels or consonants and many more
* Added progress bar
* Fixed a bug where `as.ab()` would return an error on invalid input values
* The `as.ab()` function will now throw a note if more than 1 antimicrobial drug could be retrieved from a single input value.
* Fixed a bug where `eucast_rules()` would not work on a tibble when the `tibble` or `dplyr` package was loaded
* All `*_join_microorganisms()` functions and `bug_drug_combinations()` now return the original data class (e.g. `tibble`s and `data.table`s)
* Fixed a bug where `as.ab()` would return an error on invalid input values
* Fixed a bug for using grouped versions of `rsi_df()`, `proportion_df()` and `count_df()`, and fixed a bug where not all different antimicrobial results were added as rows
* Improved auto-determination for columns of types `<mo>` and `<Date>`
* Fixed a bug in `bug_drug_combinations()` for when only one antibiotic was in the input data
* Changed the summary for class `<mo>`, to highlight the %SI vs. %R
* Improved error handling, giving more useful info when functions return an error
* Algorithm improvements to `as.ab()`, many more misspellings are now translatable. The `as.ab()` function will now throw a note if more than 1 antimicrobial drug could be retrieved from a single input value.
* Added progress bar to `as.ab()`
# AMR 1.2.0