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(v1.2.0.9022) as.ab() improvement

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dr. M.S. (Matthijs) Berends
2020-07-01 16:21:36 +02:00
parent afc660dc33
commit 298e67a45b
15 changed files with 84 additions and 29 deletions
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man/as.ab.Rd
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@ -26,6 +26,14 @@ Use this function to determine the antibiotic code of one or more antibiotics. T
\details{
All entries in the \link{antibiotics} data set have three different identifiers: a human readable EARS-Net code (column \code{ab}, used by ECDC and WHONET), an ATC code (column \code{atc}, used by WHO), and a CID code (column \code{cid}, Compound ID, used by PubChem). The data set contains more than 5,000 official brand names from many different countries, as found in PubChem.
All these properties will be searched for the user input. The \code{\link[=as.ab]{as.ab()}} can correct for different forms of misspelling:
\itemize{
\item Wrong spelling of drug names (like "tobramicin" or "gentamycin"), which corrects for most audible similarities such as f/ph, x/ks, c/z/s, t/th, etc.
\item Too few or too many vowels or consonants
\item Switching two characters (like "mreopenem", often the case in clinical data, when doctors typed too fast)
\item Digitalised paper records, leaving artefacts like 0/o/O (zero and O's), B/8, n/r, etc.
}
Use the \code{\link[=ab_property]{ab_property()}} functions to get properties based on the returned antibiotic ID, see Examples.
}
\section{Source}{