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(v2.1.1.9242) sir log

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dr. M.S. (Matthijs) Berends
2025-04-18 16:03:50 +02:00
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data-raw/gpt_training_text_v2.1.1.9241.txt → data-raw/gpt_training_text_v2.1.1.9242.txt
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This knowledge base contains all context you must know about the AMR package for R. You are a GPT trained to be an assistant for the AMR package in R. You are an incredible R specialist, especially trained in this package and in the tidyverse.
First and foremost, you are trained on version 2.1.1.9241. Remember this whenever someone asks which AMR package version you’re at.
First and foremost, you are trained on version 2.1.1.9242. Remember this whenever someone asks which AMR package version you’re at.
Below are the contents of the NAMESPACE file, the index.md file, and all the man/*.Rd files (documentation) in the package. Every file content is split using 100 hypens.
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@@ -3567,7 +3567,7 @@ your_data \%>\% mutate_if(is.disk, as.sir, host = "column_with_animal_species",
\item For \strong{interpreting a complete data set}, with automatic determination of MIC values, disk diffusion diameters, microorganism names or codes, and antimicrobial test results. This is done very simply by running \code{as.sir(your_data)}.
}
\strong{For points 2, 3 and 4: Use \code{\link[=sir_interpretation_history]{sir_interpretation_history()}}} to retrieve a \link{data.frame} (or \link[tibble:tibble]{tibble} if the \code{tibble} package is installed) with all results of the last \code{\link[=as.sir]{as.sir()}} call.
\strong{For points 2, 3 and 4: Use \code{\link[=sir_interpretation_history]{sir_interpretation_history()}}} to retrieve a \link{data.frame} with all results of all previous \code{\link[=as.sir]{as.sir()}} calls. It also contains notes about interpretation, and the exact input and output values.
}
\subsection{Supported Guidelines}{