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(v1.6.0.9021) join functions update

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dr. M.S. (Matthijs) Berends
2021-05-12 18:15:03 +02:00
parent 3319fbae58
commit 29dbfa2f49
119 changed files with 973 additions and 1040 deletions
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11
R/italicise_taxonomy.R
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@ -27,7 +27,7 @@
#'
#' According to the binomial nomenclature, the lowest four taxonomic levels (family, genus, species, subspecies) should be printed in italic. This function finds taxonomic names within strings and makes them italic.
#' @inheritSection lifecycle Maturing Lifecycle
#' @param string a character (vector)
#' @param string a [character] (vector)
#' @param type type of conversion of the taxonomic names, either "markdown" or "ansi", see *Details*
#' @details
#' This function finds the taxonomic names and makes them italic based on the [microorganisms] data set.
@ -42,6 +42,15 @@
#' italicise_taxonomy("An overview of S. aureus isolates")
#'
#' cat(italicise_taxonomy("An overview of S. aureus isolates", type = "ansi"))
#'
#' # since ggplot2 supports no markdown (yet), use
#' # italicise_taxonomy() and the `ggtext` pkg for titles:
#'
#' if (require("ggplot2") && require("ggtext")) {
#' ggplot(example_isolates$AMC,
#' title = italicise_taxonomy("Amoxi/clav in E. coli")) +
#' theme(plot.title = ggtext::element_markdown())
#' }
italicise_taxonomy <- function(string, type = c("markdown", "ansi")) {
if (missing(type)) {
type <- "markdown"