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(v0.8.0.9008) new verbose mode for MDROs

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dr. M.S. (Matthijs) Berends
2019-11-03 22:24:42 +01:00
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NEWS.md
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# AMR 0.8.0.9007
<small>Last updated: 30-Oct-2019</small>
# AMR 0.8.0.9008
<small>Last updated: 03-Nov-2019</small>
### New
* Support for a new MDRO guideline: Magiorakos AP, Srinivasan A *et al.* "Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance." Clinical Microbiology and Infection (2012). **This is now the new default guideline for the `mdro()` function.**
* Support for a new MDRO guideline: Magiorakos AP, Srinivasan A *et al.* "Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance." Clinical Microbiology and Infection (2012).
* This is now the new default guideline for the `mdro()` function
* The new Verbose mode (`mdro(...., verbose = TRUE)`) returns an informative data set where the reason for MDRO determination is given for every isolate
### Changes
* When running `as.rsi()` over a data set, it will now print the guideline that will be used if it is not specified by the user
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* Added "imi" as allowed abbreviation for Imipenem
* Fix for automatically determining columns with antibiotic results in `mdro()` and `eucast_rules()`
* Added ATC codes for ceftaroline, ceftobiprole and faropenem and fixed two typos in the `antibiotics` data set
* More robust way of determining valid MIC values
### Other
* Change dependency on `clean` to `cleaner`, as this package was renamed accordingly upon CRAN request
# AMR 0.8.0