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(v0.8.0.9008) new verbose mode for MDROs

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dr. M.S. (Matthijs) Berends
2019-11-03 22:24:42 +01:00
parent 09c4b04cd0
commit 29e448883d
42 changed files with 338 additions and 343 deletions
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2
R/bug_drug_combinations.R
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@ -33,7 +33,6 @@
#' @inheritParams base::formatC
#' @importFrom dplyr %>% rename group_by select mutate filter summarise ungroup
#' @importFrom tidyr spread
# @importFrom clean freq percentage
#' @details The function \code{format} calculates the resistance per bug-drug combination. Use \code{combine_IR = FALSE} (default) to test R vs. S+I and \code{combine_IR = TRUE} to test R+I vs. S.
#'
#' The language of the output can be overwritten with \code{options(AMR_locale)}, please see \link{translate}.
@ -95,6 +94,7 @@ bug_drug_combinations <- function(x,
#' @importFrom dplyr everything rename %>% ungroup group_by summarise mutate_all arrange everything lag
#' @importFrom tidyr spread
#' @importFrom cleaner percentage
#' @exportMethod format.bug_drug_combinations
#' @export
#' @rdname bug_drug_combinations