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(v0.7.1.9018) deps

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dr. M.S. (Matthijs) Berends
2019-07-30 13:12:40 +02:00
parent ec0ca20dee
commit 2a62c3d62a
14 changed files with 21 additions and 24 deletions
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4
man/eucast_rules.Rd
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@ -135,8 +135,6 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
}
\examples{
a <- eucast_rules(septic_patients)
a <- data.frame(mo = c("Staphylococcus aureus",
"Enterococcus faecalis",
"Escherichia coli",
@ -172,7 +170,7 @@ b
# 5 Pseudomonas aeruginosa R R - - R R R
# do not apply EUCAST rules, but rather get a a data.frame
# do not apply EUCAST rules, but rather get a data.frame
# with 18 rows, containing all details about the transformations:
c <- eucast_rules(a, verbose = TRUE)
}

1
man/like.Rd
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@ -56,6 +56,7 @@ a \%like\% b
# get frequencies of bacteria whose name start with 'Ent' or 'ent'
library(dplyr)
library(clean)
septic_patients \%>\%
left_join_microorganisms() \%>\%
filter(genus \%like\% '^ent') \%>\%