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reference/index.md
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@@ -54,6 +54,7 @@ to add your own custom microorganisms to this package.
[`mo_is_intrinsic_resistant()`](https://amr-for-r.org/reference/mo_property.md)
[`mo_oxygen_tolerance()`](https://amr-for-r.org/reference/mo_property.md)
[`mo_is_anaerobic()`](https://amr-for-r.org/reference/mo_property.md)
[`mo_morphology()`](https://amr-for-r.org/reference/mo_property.md)
[`mo_snomed()`](https://amr-for-r.org/reference/mo_property.md)
[`mo_ref()`](https://amr-for-r.org/reference/mo_property.md)
[`mo_authors()`](https://amr-for-r.org/reference/mo_property.md)
@@ -176,13 +177,15 @@ antibiotic classes
or determine multi-drug resistant microorganisms (MDRO,
[`mdro()`](https://amr-for-r.org/reference/mdro.md)).
- [`antibiogram()`](https://amr-for-r.org/reference/antibiogram.md)
[`wisca()`](https://amr-for-r.org/reference/antibiogram.md)
- [`wisca()`](https://amr-for-r.org/reference/antibiogram.md)
[`antibiogram()`](https://amr-for-r.org/reference/antibiogram.md)
[`retrieve_wisca_parameters()`](https://amr-for-r.org/reference/antibiogram.md)
[`plot(`*`<antibiogram>`*`)`](https://amr-for-r.org/reference/antibiogram.md)
[`autoplot(`*`<antibiogram>`*`)`](https://amr-for-r.org/reference/antibiogram.md)
[`wisca_plot()`](https://amr-for-r.org/reference/antibiogram.md)
[`knit_print(`*`<antibiogram>`*`)`](https://amr-for-r.org/reference/antibiogram.md)
: Generate Traditional, Combination, Syndromic, or WISCA Antibiograms
: Generate Antibiograms (WISCA, Traditional, Combination, or
Syndromic)
- [`resistance()`](https://amr-for-r.org/reference/proportion.md)
[`susceptibility()`](https://amr-for-r.org/reference/proportion.md)
@@ -390,7 +393,7 @@ our [How To’s](https://amr-for-r.org/articles/index.md) for more
information about how to work with functions in this package.
- [`microorganisms`](https://amr-for-r.org/reference/microorganisms.md)
: Data Set with 78 679 Taxonomic Records of Microorganisms
: Data Set with 96 982 Taxonomic Records of Microorganisms
- [`antimicrobials`](https://amr-for-r.org/reference/antimicrobials.md)
[`antibiotics`](https://amr-for-r.org/reference/antimicrobials.md)
[`antivirals`](https://amr-for-r.org/reference/antimicrobials.md) :
@@ -402,9 +405,9 @@ information about how to work with functions in this package.
- [`esbl_isolates`](https://amr-for-r.org/reference/esbl_isolates.md) :
Data Set with 500 ESBL Isolates
- [`microorganisms.codes`](https://amr-for-r.org/reference/microorganisms.codes.md)
: Data Set with 6 050 Common Microorganism Codes
: Data Set with 6 029 Common Microorganism Codes
- [`microorganisms.groups`](https://amr-for-r.org/reference/microorganisms.groups.md)
: Data Set with 534 Microorganisms In Species Groups
: Data Set with 530 Microorganisms In Species Groups
- [`intrinsic_resistant`](https://amr-for-r.org/reference/intrinsic_resistant.md)
: Data Set Denoting Bacterial Intrinsic Resistance
- [`dosage`](https://amr-for-r.org/reference/dosage.md) : Data Set with