P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-06-24 07:36:21 +02:00
Code Releases Activity

Built site for AMR@3.0.1.9061: 0c1709c

Browse Source
This commit is contained in:
github-actions
2026-06-23 18:00:14 +00:00
parent 9447e0f2c2
commit 2a7bfb9ffb
328 changed files with 5357 additions and 3687 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
reference/microorganisms.groups.md
View File

@@ -1,4 +1,4 @@
# Data Set with 534 Microorganisms In Species Groups
# Data Set with 530 Microorganisms In Species Groups
A data set containing species groups and microbiological complexes,
which are used in [the clinical breakpoints
@@ -12,7 +12,7 @@ microorganisms.groups
## Format
A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 534
A [tibble](https://tibble.tidyverse.org/reference/tibble.html) with 530
observations and 4 variables:
- `mo_group`
@@ -56,7 +56,7 @@ repository](https://github.com/msberends/AMR/tree/main/data-raw/datasets).
``` r
microorganisms.groups
#> # A tibble: 534 × 4
#> # A tibble: 530 × 4
#> mo_group mo mo_group_name mo_name
#> <mo> <mo> <chr> <chr>
#> 1 B_ACNTB_BMNN-C B_ACNTB_BMNN Acinetobacter baumannii complex Acinetobacter ba…
@@ -69,7 +69,7 @@ microorganisms.groups
#> 8 B_BCTRD_FRGL-C B_BCTRD_OVTS Bacteroides fragilis complex Bacteroides ovat…
#> 9 B_BCTRD_FRGL-C B_BCTRD_THTT Bacteroides fragilis complex Bacteroides thet…
#> 10 B_BCTRD_FRGL-C B_PHCCL_VLGT Bacteroides fragilis complex Bacteroides vulg…
#> # ℹ 524 more rows
#> # ℹ 520 more rows
# these are all species in the Bacteroides fragilis group, as per WHONET:
microorganisms.groups[microorganisms.groups$mo_group == "B_BCTRD_FRGL-C", ]