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@@ -63,8 +63,9 @@ where:
- \\p_n\\ is the human pathogenic prevalence group of \\n\\, as
described below;
- \\k_n\\ is the taxonomic kingdom of \\n\\, set as Bacteria = 1, Fungi
= 1.25, Protozoa = 1.5, Chromista = 1.75, Archaea = 2, others = 3.
- \\k_n\\ is the taxonomic domain ('kingdom' until taxonomic
reclassification of 2024) of \\n\\, set as Bacteria = 1, Fungi = 1.25,
Protozoa = 1.5, Chromista = 1.75, Archaea = 2, others = 3.
The grouping into human pathogenic prevalence \\p\\ is based on recent
work from Bartlett *et al.* (2022,
@@ -127,17 +128,18 @@ Furthermore,
*Hymenolepis*, *Hypomyces*, *Hysterothylacium*, *Kloeckera*,
*Kluyveromyces*, *Kodamaea*, *Lacazia*, *Leishmania*, *Lichtheimia*,
*Lodderomyces*, *Lomentospora*, *Madurella*, *Malassezia*,
*Malbranchea*, *Metagonimus*, *Meyerozyma*, *Microsporidium*,
*Microsporum*, *Millerozyma*, *Mortierella*, *Mucor*,
*Mycocentrospora*, *Nannizzia*, *Necator*, *Nectria*, *Ochroconis*,
*Oesophagostomum*, *Oidiodendron*, *Opisthorchis*, *Paecilomyces*,
*Paracoccidioides*, *Pediculus*, *Penicillium*, *Phaeoacremonium*,
*Phaeomoniella*, *Phialophora*, *Phlebotomus*, *Phoma*, *Pichia*,
*Piedraia*, *Pithomyces*, *Pityrosporum*, *Pneumocystis*,
*Pseudallescheria*, *Pseudoscopulariopsis*, *Pseudoterranova*,
*Pulex*, *Purpureocillium*, *Quambalaria*, *Rhinocladiella*,
*Rhizomucor*, *Rhizopus*, *Rhodotorula*, *Saccharomyces*, *Saksenaea*,
*Saprochaete*, *Sarcoptes*, *Scedosporium*, *Schistosoma*,
*Malbranchea*, *Metagonimus*, *Meyerozyma*, *Microascus*,
*Microsporidium*, *Microsporum*, *Millerozyma*, *Mortierella*,
*Mucor*, *Mycocentrospora*, *Nannizzia*, *Necator*, *Nectria*,
*Ochroconis*, *Oesophagostomum*, *Oidiodendron*, *Opisthorchis*,
*Paecilomyces*, *Paracoccidioides*, *Pediculus*, *Penicillium*,
*Phaeoacremonium*, *Phaeomoniella*, *Phialophora*, *Phlebotomus*,
*Phoma*, *Pichia*, *Piedraia*, *Pithomyces*, *Pityrosporum*,
*Plasmodium*, *Pneumocystis*, *Pseudallescheria*,
*Pseudoscopulariopsis*, *Pseudoterranova*, *Pulex*, *Purpureocillium*,
*Quambalaria*, *Rhinocladiella*, *Rhizomucor*, *Rhizopus*,
*Rhodotorula*, *Saccharomyces*, *Saksenaea*, *Saprochaete*,
*Sarcoptes*, *Scedosporium*, *Schistosoma*, *Schizophyllum*,
*Schizosaccharomyces*, *Scolecobasidium*, *Scopulariopsis*,
*Scytalidium*, *Spirometra*, *Sporobolomyces*, *Sporopachydermia*,
*Sporothrix*, *Sporotrichum*, *Stachybotrys*, *Strongyloides*,