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reference/top_n_microorganisms.md

@@ -9,8 +9,14 @@ the top 5 genera.
 ## Usage
 
 ``` r
-top_n_microorganisms(x, n, property = "species", n_for_each = NULL,
-  col_mo = NULL, ...)
+top_n_microorganisms(
+  x,
+  n,
+  property = "species",
+  n_for_each = NULL,
+  col_mo = NULL,
+  ...
+)
 ```
 
 ## Arguments
@@ -29,16 +35,16 @@ top_n_microorganisms(x, n, property = "species", n_for_each = NULL,
   A character string indicating the microorganism property to use for
   filtering. Must be one of the column names of the
   [microorganisms](https://amr-for-r.org/reference/microorganisms.md)
-  data set: `"mo"`, `"fullname"`, `"status"`, `"kingdom"`, `"phylum"`,
-  `"class"`, `"order"`, `"family"`, `"genus"`, `"species"`,
-  `"subspecies"`, `"rank"`, `"ref"`, `"oxygen_tolerance"`, `"source"`,
-  `"lpsn"`, `"lpsn_parent"`, `"lpsn_renamed_to"`, `"mycobank"`,
-  `"mycobank_parent"`, `"mycobank_renamed_to"`, `"gbif"`,
-  `"gbif_parent"`, `"gbif_renamed_to"`, `"prevalence"`, or `"snomed"`.
-  If `NULL`, the raw values from `col_mo` will be used without
-  transformation. When using `"species"` (default) or `"subpecies"`, the
-  genus will be added to make sure each (sub)species still belongs to
-  the right genus.
+  data set: `"mo"`, `"fullname"`, `"status"`, `"domain"`, `"kingdom"`,
+  `"phylum"`, `"class"`, `"order"`, `"family"`, `"genus"`, `"species"`,
+  `"subspecies"`, `"rank"`, `"ref"`, `"oxygen_tolerance"`,
+  `"morphology"`, `"source"`, `"lpsn"`, `"lpsn_parent"`,
+  `"lpsn_renamed_to"`, `"mycobank"`, `"mycobank_parent"`,
+  `"mycobank_renamed_to"`, `"gbif"`, `"gbif_parent"`,
+  `"gbif_renamed_to"`, `"prevalence"`, or `"snomed"`. If `NULL`, the raw
+  values from `col_mo` will be used without transformation. When using
+  `"species"` (default) or `"subpecies"`, the genus will be added to
+  make sure each (sub)species still belongs to the right genus.
 
 - n_for_each: