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(v3.0.1.9039) cli fixes

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dr. M.S. (Matthijs) Berends
2026-03-23 10:38:28 +01:00
parent 975a690c10
commit 2a8a1eda97
24 changed files with 104 additions and 97 deletions
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4
R/mo.R
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@@ -502,7 +502,7 @@ as.mo <- function(x,
)
if (any(out %in% AMR_env$MO_lookup$mo[match(post_Becker, AMR_env$MO_lookup$fullname)])) {
if (message_not_thrown_before("as.mo", "becker")) {
warning_("in {.fun as.mo}: Becker ", font_italic("et al."), " (2014, 2019, 2020) does not contain these species named after their publication: ",
warning_("in {.help [{.fun as.mo}](AMR::as.mo)}: Becker ", font_italic("et al."), " (2014, 2019, 2020) does not contain these species named after their publication: ",
vector_and(font_italic(gsub("Staphylococcus", "S.", post_Becker, fixed = TRUE), collapse = NULL), quotes = FALSE),
". Categorisation to CoNS/CoPS was taken from the original scientific publication(s).",
immediate = TRUE, call = FALSE
@@ -680,7 +680,7 @@ pillar_shaft.mo <- function(x, ...) {
)
# throw a warning with the affected column name(s)
if (!is.null(mo_cols)) {
col <- paste0("Column ", vector_or(colnames(df)[mo_cols], quotes = TRUE, sort = FALSE))
col <- paste0("Column ", vector_or(paste0("{.field ", font_bold(colnames(df)[mo_cols], collapse = NULL), "}"), quotes = TRUE, sort = FALSE))
} else {
col <- "The data"
}