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atc and bactid functions, readme update

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dr. M.S. (Matthijs) Berends
2018-08-25 22:01:14 +02:00
parent 460dee789f
commit 2acdb1981c
30 changed files with 761 additions and 449 deletions
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24
NAMESPACE
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@ -1,5 +1,6 @@
# Generated by roxygen2: do not edit by hand
S3method(as.data.frame,atc)
S3method(as.data.frame,bactid)
S3method(as.data.frame,frequency_tbl)
S3method(as.double,mic)
@ -17,10 +18,12 @@ S3method(kurtosis,matrix)
S3method(plot,frequency_tbl)
S3method(plot,mic)
S3method(plot,rsi)
S3method(print,atc)
S3method(print,bactid)
S3method(print,frequency_tbl)
S3method(print,mic)
S3method(print,rsi)
S3method(pull,atc)
S3method(pull,bactid)
S3method(skewness,data.frame)
S3method(skewness,default)
@ -35,12 +38,28 @@ export(MDRO)
export(MRGN)
export(abname)
export(anti_join_microorganisms)
export(as.atc)
export(as.bactid)
export(as.mic)
export(as.rsi)
export(atc.certe)
export(atc.official)
export(atc.official_nl)
export(atc.trivial_nl)
export(atc.umcg)
export(atc_ddd)
export(atc_groups)
export(atc_property)
export(bactid.aerobic)
export(bactid.family)
export(bactid.fullname)
export(bactid.genus)
export(bactid.gramstain)
export(bactid.gramstain_nl)
export(bactid.species)
export(bactid.subspecies)
export(bactid.type)
export(bactid.type_nl)
export(clipboard_export)
export(clipboard_import)
export(count_I)
@ -61,6 +80,7 @@ export(guess_atc)
export(guess_bactid)
export(inner_join_microorganisms)
export(interpretive_reading)
export(is.atc)
export(is.bactid)
export(is.mic)
export(is.rsi)
@ -70,7 +90,6 @@ export(key_antibiotics_equal)
export(kurtosis)
export(left_join_microorganisms)
export(like)
export(mo_property)
export(n_rsi)
export(p.symbol)
export(portion_I)
@ -89,6 +108,7 @@ export(semi_join_microorganisms)
export(skewness)
export(theme_rsi)
export(top_freq)
exportMethods(as.data.frame.atc)
exportMethods(as.data.frame.bactid)
exportMethods(as.data.frame.frequency_tbl)
exportMethods(as.double.mic)
@ -107,10 +127,12 @@ exportMethods(kurtosis.matrix)
exportMethods(plot.frequency_tbl)
exportMethods(plot.mic)
exportMethods(plot.rsi)
exportMethods(print.atc)
exportMethods(print.bactid)
exportMethods(print.frequency_tbl)
exportMethods(print.mic)
exportMethods(print.rsi)
exportMethods(pull.atc)
exportMethods(pull.bactid)
exportMethods(skewness)
exportMethods(skewness.data.frame)