From 2b13d43a3f3fd01bde48af9fce03b67b769654c6 Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Thu, 19 Jan 2023 12:03:56 +0000 Subject: [PATCH] Built site for AMR: 1.8.2.9094@593d740 --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/AMR.html | 520 +++++++++--------- .../AMR_files/figure-html/disk_plots-1.png | Bin 39157 -> 39313 bytes .../figure-html/disk_plots_mo_ab-1.png | Bin 51255 -> 55157 bytes .../AMR_files/figure-html/mic_plots-1.png | Bin 27763 -> 27999 bytes .../AMR_files/figure-html/mic_plots-2.png | Bin 38237 -> 37048 bytes .../figure-html/mic_plots_mo_ab-1.png | Bin 39160 -> 37479 bytes .../figure-html/mic_plots_mo_ab-2.png | Bin 52870 -> 50811 bytes articles/AMR_files/figure-html/plot 1-1.png | Bin 43060 -> 43222 bytes articles/AMR_files/figure-html/plot 3-1.png | Bin 28434 -> 28471 bytes articles/AMR_files/figure-html/plot 4-1.png | Bin 78106 -> 78152 bytes articles/AMR_files/figure-html/plot 5-1.png | Bin 49848 -> 49916 bytes articles/EUCAST.html | 2 +- articles/MDR.html | 58 +- articles/PCA.html | 2 +- articles/SPSS.html | 6 +- articles/WHONET.html | 2 +- articles/datasets.html | 4 +- articles/index.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 2 +- authors.html | 2 +- index.html | 2 +- news/index.html | 22 +- pkgdown.yml | 2 +- reference/AMR-deprecated.html | 2 +- reference/AMR-options.html | 166 ++++++ reference/AMR.html | 2 +- reference/Rplot005.png | Bin 13241 -> 13189 bytes reference/Rplot006.png | Bin 12746 -> 12696 bytes reference/Rplot007.png | Bin 15715 -> 14593 bytes reference/Rplot008.png | Bin 19974 -> 20068 bytes reference/Rplot009.png | Bin 8428 -> 8554 bytes reference/WHOCC.html | 2 +- reference/WHONET.html | 2 +- reference/ab_from_text.html | 2 +- reference/ab_property.html | 2 +- reference/add_custom_antimicrobials.html | 2 +- reference/add_custom_microorganisms.html | 34 +- reference/age.html | 22 +- reference/age_groups.html | 2 +- reference/antibiotic_class_selectors.html | 2 +- reference/antibiotics.html | 2 +- reference/as.ab.html | 2 +- reference/as.av.html | 2 +- reference/as.disk.html | 2 +- reference/as.mic.html | 2 +- reference/as.mo.html | 2 +- reference/as.rsi.html | 22 +- reference/atc_online.html | 2 +- reference/av_from_text.html | 2 +- reference/av_property.html | 2 +- reference/availability.html | 2 +- reference/bug_drug_combinations.html | 2 +- reference/count.html | 2 +- reference/custom_eucast_rules.html | 2 +- reference/dosage.html | 2 +- reference/eucast_rules.html | 2 +- reference/example_isolates.html | 2 +- reference/example_isolates_unclean.html | 2 +- reference/first_isolate.html | 2 +- reference/g.test.html | 2 +- reference/get_episode.html | 143 +++-- reference/ggplot_pca.html | 2 +- reference/ggplot_rsi.html | 2 +- reference/guess_ab_col.html | 2 +- reference/index.html | 2 +- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 2 +- reference/kurtosis.html | 6 +- reference/like.html | 2 +- reference/mdro.html | 2 +- reference/mean_amr_distance.html | 88 +-- reference/microorganisms.codes.html | 2 +- reference/microorganisms.html | 2 +- reference/mo_matching_score.html | 2 +- reference/mo_property.html | 7 +- reference/mo_source.html | 2 +- reference/pca.html | 2 +- reference/plot-1.png | Bin 26852 -> 25839 bytes reference/plot-2.png | Bin 27037 -> 27031 bytes reference/plot-3.png | Bin 28600 -> 27773 bytes reference/plot-4.png | Bin 38760 -> 37684 bytes reference/plot-5.png | Bin 38695 -> 38647 bytes reference/plot-6.png | Bin 37415 -> 37402 bytes reference/plot-7.png | Bin 41509 -> 38755 bytes reference/plot-8.png | Bin 58461 -> 58492 bytes reference/plot-9.png | Bin 26152 -> 26129 bytes reference/plot.html | 2 +- reference/proportion.html | 2 +- reference/random.html | 36 +- reference/resistance_predict.html | 2 +- reference/rsi_translation.html | 2 +- reference/skewness.html | 4 +- reference/translate.html | 2 +- search.json | 2 +- sitemap.xml | 3 + 100 files changed, 714 insertions(+), 547 deletions(-) create mode 100644 reference/AMR-options.html diff --git a/404.html b/404.html index cd39e62d..1ddb96e2 100644 --- a/404.html +++ b/404.html @@ -36,7 +36,7 @@ AMR (for R) - 1.8.2.9093 + 1.8.2.9094 + + + + + +
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This is an overview of the package-specific options() you can set in the AMR package.

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Options

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