P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 19:01:51 +02:00
Code Releases Activity

new relative episode determination in get_episode(), fix for plotting disk/MIC values

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2023-02-24 17:06:30 +01:00
parent 92029c9e95
commit 2c5a9bb622
6 changed files with 220 additions and 74 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
data-raw/reproduction_of_clinical_breakpoints.R
View File

@ -95,8 +95,8 @@ new_mo_codes <- breakpoints %>%
new_mo_codes %>%
mutate(code = toupper(ORGANISM_CODE)) %>%
rename(mo_new = mo) %>%
left_join(microorganisms.codes) %>%
filter(mo != mo_new)
left_join(microorganisms.codes %>% rename(mo_old = mo)) %>%
filter(mo_old != mo_new)
microorganisms.codes <- microorganisms.codes %>%
filter(!code %in% toupper(new_mo_codes$ORGANISM_CODE)) %>%