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(v1.2.0.9002) fix for joins

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dr. M.S. (Matthijs) Berends
2020-06-03 14:33:55 +02:00
parent 5dc4c96b7d
commit 2c8d600914
11 changed files with 27 additions and 19 deletions
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20
R/join_microorganisms.R
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@@ -57,7 +57,7 @@ inner_join_microorganisms <- function(x, by = NULL, suffix = c("2", ""), ...) {
check_dataset_integrity()
check_groups_before_join(x, "inner_join_microorganisms")
checked <- joins_check_df(x, by)
x_class <- class(x)
x_class <- get_prejoined_class(x)
x <- checked$x
by <- checked$by
join <- suppressWarnings(
@@ -76,7 +76,7 @@ left_join_microorganisms <- function(x, by = NULL, suffix = c("2", ""), ...) {
check_dataset_integrity()
check_groups_before_join(x, "left_join_microorganisms")
checked <- joins_check_df(x, by)
x_class <- class(x)
x_class <- get_prejoined_class(x)
x <- checked$x
by <- checked$by
join <- suppressWarnings(
@@ -95,7 +95,7 @@ right_join_microorganisms <- function(x, by = NULL, suffix = c("2", ""), ...) {
check_dataset_integrity()
check_groups_before_join(x, "right_join_microorganisms")
checked <- joins_check_df(x, by)
x_class <- class(x)
x_class <- get_prejoined_class(x)
x <- checked$x
by <- checked$by
join <- suppressWarnings(
@@ -114,7 +114,7 @@ full_join_microorganisms <- function(x, by = NULL, suffix = c("2", ""), ...) {
check_dataset_integrity()
check_groups_before_join(x, "full_join_microorganisms")
checked <- joins_check_df(x, by)
x_class <- class(x)
x_class <- get_prejoined_class(x)
x <- checked$x
by <- checked$by
join <- suppressWarnings(
@@ -132,7 +132,7 @@ full_join_microorganisms <- function(x, by = NULL, suffix = c("2", ""), ...) {
semi_join_microorganisms <- function(x, by = NULL, ...) {
check_dataset_integrity()
check_groups_before_join(x, "semi_join_microorganisms")
x_class <- class(x)
x_class <- get_prejoined_class(x)
checked <- joins_check_df(x, by)
x <- checked$x
by <- checked$by
@@ -149,7 +149,7 @@ anti_join_microorganisms <- function(x, by = NULL, ...) {
check_dataset_integrity()
check_groups_before_join(x, "anti_join_microorganisms")
checked <- joins_check_df(x, by)
x_class <- class(x)
x_class <- get_prejoined_class(x)
x <- checked$x
by <- checked$by
join <- suppressWarnings(
@@ -190,6 +190,14 @@ joins_check_df <- function(x, by) {
by = joinby)
}
get_prejoined_class <- function(x) {
if (is.data.frame(x)) {
class(x)
} else {
"data.frame"
}
}
check_groups_before_join <- function(x, fn) {
if (is.data.frame(x) && !is.null(attributes(x)$groups)) {
warning("Groups are dropped, since the ", fn, "() function relies on merge() from base R, not on join() from dplyr.", call. = FALSE)