P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-01-20 22:44:36 +01:00
Code Releases Activity

(v3.0.1.9018) fixes #249

Browse Source 
updates AB groups
This commit is contained in:
dr. M.S. (Matthijs) Berends
2026-01-16 10:57:03 +01:00
parent fd50c51543
commit 2df2911cf4
35 changed files with 104 additions and 90 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
man/mdro.Rd
View File

@@ -136,7 +136,7 @@ Custom guidelines can be set with the \code{\link[=custom_mdro_guideline]{custom
}
\section{Interpretation of SIR}{
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/newsiandr}).
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/}).
This AMR package follows insight; use \code{\link[=susceptibility]{susceptibility()}} (equal to \code{\link[=proportion_SI]{proportion_SI()}}) to determine antimicrobial susceptibility and \code{\link[=count_susceptible]{count_susceptible()}} (equal to \code{\link[=count_SI]{count_SI()}}) to count susceptible isolates.
}