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(v3.0.1.9018) fixes #249

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updates AB groups
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dr. M.S. (Matthijs) Berends
2026-01-16 10:57:03 +01:00
parent fd50c51543
commit 2df2911cf4
35 changed files with 104 additions and 90 deletions
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man/resistance_predict.Rd
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@@ -85,7 +85,7 @@ Valid options for the statistical model (argument \code{model}) are:
}
\section{Interpretation of SIR}{
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/newsiandr}).
In 2019, the European Committee on Antimicrobial Susceptibility Testing (EUCAST) has decided to change the definitions of susceptibility testing categories S, I, and R (\url{https://www.eucast.org/bacteria/clinical-breakpoints-and-interpretation/definition-of-s-i-and-r/}).
This AMR package follows insight; use \code{\link[=susceptibility]{susceptibility()}} (equal to \code{\link[=proportion_SI]{proportion_SI()}}) to determine antimicrobial susceptibility and \code{\link[=count_susceptible]{count_susceptible()}} (equal to \code{\link[=count_SI]{count_SI()}}) to count susceptible isolates.
}