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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9151</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9152</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -187,7 +187,7 @@
website update since they are based on randomly created values and the
page was written in <a href="https://rmarkdown.rstudio.com/" class="external-link">R
Markdown</a>. However, the methodology remains unchanged. This page was
generated on 11 March 2023.</p>
generated on 12 March 2023.</p>
<div class="section level2">
<h2 id="introduction">Introduction<a class="anchor" aria-label="anchor" href="#introduction"></a>
</h2>
@ -243,21 +243,21 @@ make the structure of your data generally look like this:</p>
</tr></thead>
<tbody>
<tr class="odd">
<td align="center">2023-03-11</td>
<td align="center">2023-03-12</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">S</td>
</tr>
<tr class="even">
<td align="center">2023-03-11</td>
<td align="center">2023-03-12</td>
<td align="center">abcd</td>
<td align="center">Escherichia coli</td>
<td align="center">S</td>
<td align="center">R</td>
</tr>
<tr class="odd">
<td align="center">2023-03-11</td>
<td align="center">2023-03-12</td>
<td align="center">efgh</td>
<td align="center">Escherichia coli</td>
<td align="center">R</td>
@ -962,110 +962,110 @@ antibiograms:</p>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>E. coli</em> (415-415)</td>
<em>E. coli</em> (416-416)</td>
<td align="right">63</td>
<td align="right">59</td>
<td align="right">57</td>
<td align="right">58</td>
<td align="right">61</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>E. coli</em> (379-379)</td>
<td align="right">63</td>
<td align="right">61</td>
<td align="right">57</td>
<td align="right">61</td>
<em>E. coli</em> (406-406)</td>
<td align="right">65</td>
<td align="right">60</td>
<td align="right">55</td>
<td align="right">65</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>E. coli</em> (456-456)</td>
<td align="right">66</td>
<td align="right">57</td>
<td align="right">58</td>
<td align="right">66</td>
<em>E. coli</em> (428-428)</td>
<td align="right">64</td>
<td align="right">56</td>
<td align="right">60</td>
<td align="right">63</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>K. pneumoniae</em> (106-106)</td>
<td align="right">57</td>
<td align="right">52</td>
<td align="right">58</td>
<td align="right">59</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>K. pneumoniae</em> (101-101)</td>
<td align="right">63</td>
<td align="right">49</td>
<td align="right">54</td>
<td align="right">56</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>K. pneumoniae</em> (95-95)</td>
<td align="right">54</td>
<td align="right">51</td>
<td align="right">65</td>
<td align="right">57</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>K. pneumoniae</em> (120-120)</td>
<td align="right">70</td>
<td align="right">57</td>
<td align="right">57</td>
<td align="right">66</td>
</tr>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>S. aureus</em> (225-225)</td>
<td align="right">64</td>
<td align="right">58</td>
<td align="right">58</td>
<td align="right">64</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>S. aureus</em> (203-203)</td>
<td align="right">61</td>
<td align="right">60</td>
<td align="right">56</td>
<td align="right">59</td>
<td align="right">52</td>
<td align="right">57</td>
<td align="right">53</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>K. pneumoniae</em> (109-109)</td>
<td align="right">72</td>
<td align="right">53</td>
<td align="right">61</td>
<td align="right">67</td>
</tr>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">
<em>S. aureus</em> (221-221)</td>
<td align="right">66</td>
<td align="right">54</td>
<td align="right">57</td>
<td align="right">61</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">
<em>S. aureus</em> (217-217)</td>
<td align="right">64</td>
<td align="right">60</td>
<td align="right">58</td>
<td align="right">65</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. aureus</em> (233-233)</td>
<td align="right">68</td>
<td align="right">53</td>
<td align="right">58</td>
<td align="right">65</td>
<em>S. aureus</em> (223-223)</td>
<td align="right">64</td>
<td align="right">56</td>
<td align="right">57</td>
<td align="right">63</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">
<em>S. pneumoniae</em> (122-122)</td>
<td align="right">65</td>
<td align="right">55</td>
<td align="right">55</td>
<td align="right">65</td>
<em>S. pneumoniae</em> (134-134)</td>
<td align="right">69</td>
<td align="right">56</td>
<td align="right">58</td>
<td align="right">68</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">
<em>S. pneumoniae</em> (137-137)</td>
<td align="right">63</td>
<td align="right">51</td>
<td align="right">65</td>
<td align="right">66</td>
<em>S. pneumoniae</em> (138-138)</td>
<td align="right">64</td>
<td align="right">57</td>
<td align="right">61</td>
<td align="right">67</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">
<em>S. pneumoniae</em> (140-140)</td>
<td align="right">64</td>
<td align="right">61</td>
<em>S. pneumoniae</em> (127-127)</td>
<td align="right">59</td>
<td align="right">66</td>
<td align="right">54</td>
<td align="right">60</td>
<td align="right">62</td>
</tr>
</tbody>
</table>
@ -1090,45 +1090,45 @@ antibiograms:</p>
<tbody>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">Gram-negative (516-516)</td>
<td align="right">63</td>
<td align="right">55</td>
<td align="right">60</td>
<td align="left">Gram-negative (522-522)</td>
<td align="right">61</td>
<td align="right">57</td>
<td align="right">61</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">Gram-negative (474-474)</td>
<td align="right">61</td>
<td align="right">59</td>
<td align="right">60</td>
<td align="left">Gram-negative (507-507)</td>
<td align="right">64</td>
<td align="right">58</td>
<td align="right">62</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (576-576)</td>
<td align="right">66</td>
<td align="right">57</td>
<td align="left">Gram-negative (537-537)</td>
<td align="right">66</td>
<td align="right">56</td>
<td align="right">64</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">Gram-positive (347-347)</td>
<td align="right">65</td>
<td align="right">57</td>
<td align="right">65</td>
<td align="left">Gram-positive (355-355)</td>
<td align="right">67</td>
<td align="right">55</td>
<td align="right">64</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (340-340)</td>
<td align="right">61</td>
<td align="right">56</td>
<td align="right">61</td>
<td align="left">Gram-positive (355-355)</td>
<td align="right">64</td>
<td align="right">59</td>
<td align="right">65</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">Gram-positive (373-373)</td>
<td align="right">66</td>
<td align="right">56</td>
<td align="right">66</td>
<td align="left">Gram-positive (350-350)</td>
<td align="right">62</td>
<td align="right">55</td>
<td align="right">63</td>
</tr>
</tbody>
</table>
@ -1152,45 +1152,45 @@ antibiograms:</p>
<tbody>
<tr class="odd">
<td align="left">Cardial</td>
<td align="left">Gram-negative (516-516)</td>
<td align="right">63</td>
<td align="right">75</td>
<td align="right">72</td>
<td align="left">Gram-negative (522-522)</td>
<td align="right">61</td>
<td align="right">76</td>
<td align="right">74</td>
</tr>
<tr class="even">
<td align="left">Respiratory</td>
<td align="left">Gram-negative (474-474)</td>
<td align="right">61</td>
<td align="left">Gram-negative (507-507)</td>
<td align="right">64</td>
<td align="right">75</td>
<td align="right">73</td>
<td align="right">74</td>
</tr>
<tr class="odd">
<td align="left">Rheumatic</td>
<td align="left">Gram-negative (576-576)</td>
<td align="left">Gram-negative (537-537)</td>
<td align="right">66</td>
<td align="right">78</td>
<td align="right">78</td>
<td align="right">77</td>
<td align="right">76</td>
</tr>
<tr class="even">
<td align="left">Cardial</td>
<td align="left">Gram-positive (347-347)</td>
<td align="right">65</td>
<td align="right">77</td>
<td align="right">75</td>
<td align="left">Gram-positive (355-355)</td>
<td align="right">67</td>
<td align="right">80</td>
<td align="right">79</td>
</tr>
<tr class="odd">
<td align="left">Respiratory</td>
<td align="left">Gram-positive (340-340)</td>
<td align="right">61</td>
<td align="right">77</td>
<td align="right">73</td>
<td align="left">Gram-positive (355-355)</td>
<td align="right">64</td>
<td align="right">76</td>
<td align="right">75</td>
</tr>
<tr class="even">
<td align="left">Rheumatic</td>
<td align="left">Gram-positive (373-373)</td>
<td align="right">66</td>
<td align="right">78</td>
<td align="right">78</td>
<td align="left">Gram-positive (350-350)</td>
<td align="right">62</td>
<td align="right">76</td>
<td align="right">72</td>
</tr>
</tbody>
</table>