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authors from ITIS, diff for freq

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dr. M.S. (Matthijs) Berends
2018-10-01 11:39:43 +02:00
parent 92c9cc2608
commit 3119a221e5
17 changed files with 280 additions and 141 deletions
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R/data.R
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@ -124,7 +124,7 @@
#'
#' A data set containing the complete microbial taxonomy of the kingdoms Bacteria, Fungi and Protozoa. MO codes can be looked up using \code{\link{as.mo}}.
#' @inheritSection as.mo ITIS
#' @format A \code{\link{data.frame}} with 18,831 observations and 15 variables:
#' @format A \code{\link{data.frame}} with 18,833 observations and 16 variables:
#' \describe{
#' \item{\code{mo}}{ID of microorganism}
#' \item{\code{tsn}}{Taxonomic Serial Number (TSN), as defined by ITIS}
@ -140,7 +140,8 @@
#' \item{\code{gramstain}}{Gram of microorganism, like \code{"Gram negative"}}
#' \item{\code{type}}{Type of microorganism, like \code{"Bacteria"} and \code{"Fungi"}}
#' \item{\code{prevalence}}{A rounded integer based on prevalence of the microorganism. Used internally by \code{\link{as.mo}}, otherwise quite meaningless.}
#' \item{\code{mo.old}}{The old ID for package versions 0.3.0 and lower.}
#' \item{\code{authors}}{Author(s) that published this taxonomic name as found in ITIS, see Source}
#' \item{\code{year}}{Year in which the author(s) published this taxonomic name as found in ITIS, see Source}
#' }
#' @source [3] Integrated Taxonomic Information System (ITIS) on-line database, \url{https://www.itis.gov}.
#' @seealso \code{\link{as.mo}} \code{\link{mo_property}} \code{\link{microorganisms.umcg}}