From 32399fd1338777c6900a2bd493a4d6168167b945 Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Tue, 11 Feb 2025 16:30:48 +0000 Subject: [PATCH] Built site for AMR@2.1.1.9144: 5ff9210 --- articles/AMR_with_tidymodels.html | 2 +- pkgdown.yml | 2 +- reference/as.sir.html | 20 ++--- reference/plot-1.png | Bin 0 -> 27548 bytes reference/plot-10.png | Bin 0 -> 27160 bytes reference/plot-11.png | Bin 0 -> 33179 bytes reference/plot-12.png | Bin 0 -> 77911 bytes reference/plot-13.png | Bin 0 -> 69097 bytes reference/plot-14.png | Bin 0 -> 25623 bytes reference/plot-15.png | Bin 0 -> 36353 bytes reference/plot-16.png | Bin 0 -> 53905 bytes reference/plot-17.png | Bin 0 -> 24287 bytes reference/plot-18.png | Bin 0 -> 28723 bytes reference/plot-19.png | Bin 0 -> 19541 bytes reference/plot-2.png | Bin 0 -> 27150 bytes reference/plot-20.png | Bin 0 -> 29791 bytes reference/plot-3.png | Bin 0 -> 27930 bytes reference/plot-4.png | Bin 0 -> 41319 bytes reference/plot-5.png | Bin 0 -> 40810 bytes reference/plot-6.png | Bin 0 -> 40161 bytes reference/plot-7.png | Bin 0 -> 24961 bytes reference/plot-8.png | Bin 0 -> 27928 bytes reference/plot-9.png | Bin 0 -> 29911 bytes reference/plot.html | 127 +++++++++++++++++++++++++++++- reference/random.html | 34 ++++---- reference/skewness.html | 2 +- search.json | 2 +- 27 files changed, 157 insertions(+), 32 deletions(-) create mode 100644 reference/plot-1.png create mode 100644 reference/plot-10.png create mode 100644 reference/plot-11.png create mode 100644 reference/plot-12.png create mode 100644 reference/plot-13.png create mode 100644 reference/plot-14.png create mode 100644 reference/plot-15.png create mode 100644 reference/plot-16.png create mode 100644 reference/plot-17.png create mode 100644 reference/plot-18.png create mode 100644 reference/plot-19.png create mode 100644 reference/plot-2.png create mode 100644 reference/plot-20.png create mode 100644 reference/plot-3.png create mode 100644 reference/plot-4.png create mode 100644 reference/plot-5.png create mode 100644 reference/plot-6.png create mode 100644 reference/plot-7.png create mode 100644 reference/plot-8.png create mode 100644 reference/plot-9.png diff --git a/articles/AMR_with_tidymodels.html b/articles/AMR_with_tidymodels.html index 636b16286..b7fc76811 100644 --- a/articles/AMR_with_tidymodels.html +++ b/articles/AMR_with_tidymodels.html @@ -142,7 +142,7 @@ package.
#> ✖ dplyr::filter() masks stats::filter() #> ✖ dplyr::lag() masks stats::lag() #> ✖ recipes::step() masks stats::step() -#> • Use tidymodels_prefer() to resolve common conflicts. +#> • Dig deeper into tidy modeling with R at https://www.tmwr.org library(AMR) # For AMR data analysis # Load the example_isolates dataset diff --git a/pkgdown.yml b/pkgdown.yml index f4307ed83..55fa3dc04 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -12,7 +12,7 @@ articles: resistance_predict: resistance_predict.html welcome_to_AMR: welcome_to_AMR.html WHONET: WHONET.html -last_built: 2025-02-11T07:53Z +last_built: 2025-02-11T16:27Z urls: reference: https://msberends.github.io/AMR/reference article: https://msberends.github.io/AMR/articles diff --git a/reference/as.sir.html b/reference/as.sir.html index 775d2c72c..918387f21 100644 --- a/reference/as.sir.html +++ b/reference/as.sir.html @@ -782,16 +782,16 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of #> # A tibble: 57 × 16 #> datetime index ab_given mo_given host_given ab mo #> * <dttm> <int> <chr> <chr> <chr> <ab> <mo> -#> 1 2025-02-11 07:53:48 4 AMX B_STRPT… human AMX B_STRPT_PNMN -#> 2 2025-02-11 07:53:55 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR -#> 3 2025-02-11 07:53:55 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR -#> 4 2025-02-11 07:53:56 4 genta Escheri… cattle GEN B_ESCHR_COLI -#> 5 2025-02-11 07:53:56 4 genta Escheri… cattle GEN B_ESCHR_COLI -#> 6 2025-02-11 07:53:48 3 AMX B_STRPT… human AMX B_STRPT_PNMN -#> 7 2025-02-11 07:53:55 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR -#> 8 2025-02-11 07:53:55 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR -#> 9 2025-02-11 07:53:56 3 tobra Escheri… horses TOB B_ESCHR_COLI -#> 10 2025-02-11 07:53:56 3 tobra Escheri… horses TOB B_ESCHR_COLI +#> 1 2025-02-11 16:28:00 4 AMX B_STRPT… human AMX B_STRPT_PNMN +#> 2 2025-02-11 16:28:07 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR +#> 3 2025-02-11 16:28:07 4 genta Escheri… human GEN B_[ORD]_ENTRBCTR +#> 4 2025-02-11 16:28:08 4 genta Escheri… cattle GEN B_ESCHR_COLI +#> 5 2025-02-11 16:28:08 4 genta Escheri… cattle GEN B_ESCHR_COLI +#> 6 2025-02-11 16:28:00 3 AMX B_STRPT… human AMX B_STRPT_PNMN +#> 7 2025-02-11 16:28:07 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR +#> 8 2025-02-11 16:28:07 3 tobra Escheri… human TOB B_[ORD]_ENTRBCTR +#> 9 2025-02-11 16:28:08 3 tobra Escheri… horses TOB B_ESCHR_COLI +#> 10 2025-02-11 16:28:08 3 tobra Escheri… horses TOB B_ESCHR_COLI #> # ℹ 47 more rows #> # ℹ 9 more variables: host <chr>, method <chr>, input <dbl>, outcome <sir>, #> # notes <chr>, guideline <chr>, ref_table <chr>, uti <lgl>, diff --git a/reference/plot-1.png b/reference/plot-1.png new file mode 100644 index 0000000000000000000000000000000000000000..a230853bed4691aebecafa0188a1a4df7f6a01ff GIT binary patch literal 27548 zcmeFZc~nzbw=Wu7v@E17KScpSivVRQpdujBX`y1IQ)xoqh=3Rx0Ye}Vf=xkLAd~?C zrL#erB!o^tl0ZO8FmzEcgf>CxB!Pr32_%rboml6by5o*B?t6E<_s_fE9s_pRd#$