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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9089</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9090</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,43 +183,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.01 2 32 1 0.25 128 64 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 8 32 8 8 0.002 2 256 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 8 0.5 0.01 32 <=0.001 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.5 1 0.005 0.005 1 0.25 0.025 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.002 0.005 >=32 0.01 >=32 1 0.001 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 8 16 0.25 0.25 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 36 17 9 45 47 30 42 42 19 11 44 33 18 48 9 44 19 45 31 48 31 9 12 14 34</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 20 13 26 9 46 49 48 45 50 43 26 45 39 25 10 48 11 43 47 44 27 46 45 24</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R S I S S R R R R R R S I I S S I S R R R R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R R S I I R R R S S S R R I I S S S I R R R S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 1 0.01 0.01 0.5 <=0.001 0.25 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.025 32 0.002 8 4 16 >=128 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 0.002 32 0.5 1 0.01 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 128 0.005 0.025 0.025 16 32 64 0.25 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.001 >=256 0.002 128 0.001 128 32 8 0.0625 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 4 8 0.25 64 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.5 16 <=0.25 8 4 8 16 >=64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=64 4 >=64 32 <=0.25 16 4 1 >=64 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] <=0.25 1 32 32 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 >=64 <=1 <=1 2 2 32 16 <=1 32 4 >=64 >=64 32 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 32 8 16 8 8 32 >=64 4 16 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.5 1 4 8 1 0.5 8 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.5 1 0.0625 0.0625 4 1 8 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 0.5 1 0.125 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 2 0.5 0.5 1 4 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] >=8 <=0.0625 0.25 4 0.25 <=0.0625 0.5 >=8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] <=0.0625 >=8 <=0.0625 4 0.25 0.25 1 >=8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] <=0.0625</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 50 34 42 44 13 43 44 48 46 19 13 36 18 9 43 43 27 29 43 36 45 24 48 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 25 24 50 48 29 26 38 37 44 38 41 40 40 43 20 14 47 40 47 20 12 34 48 49</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 12 16 11 11 12 14 15 15 13 13 16 15 12 14 11 14 12 11 16 12 17 14 13 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 17 17 12 12 14 14 13 15 16 14 14 17 11 17 14 15 14 12 14 13 12 12 14 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 16 15 27 22 27 25 20 18 22 18 18 16 24 20 27 19 19 17 22 20 23 23 22 19</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 26 25 16 17 21 15 18 20 26 15 19 15 24 23 16 15 16 17 15 27 27 16 19 26</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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