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(v1.5.0.9012) ampc_cephalosporin_resistance for I

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dr. M.S. (Matthijs) Berends
2021-01-25 21:58:00 +01:00
parent 24eb4453db
commit 331c1f6508
19 changed files with 73 additions and 35 deletions
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NEWS.md
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# AMR 1.5.0.9011
## <small>Last updated: 24 January 2021</small>
# AMR 1.5.0.9012
## <small>Last updated: 25 January 2021</small>
### New
* Support for EUCAST Clinical Breakpoints v11.0 (2021), effective in the `eucast_rules()` function and in `as.rsi()` to interpret MIC and disk diffusion values. This is now the default guideline in this package.
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* Fix for verbose output of `mdro(..., verbose = TRUE)` for German guideline (3MGRN and 4MGRN) and Dutch guideline (BRMO, only *P. aeruginosa*)
* `is.rsi.eligible()` now returns `FALSE` immediately if the input does not contain any of the values "R", "S" or "I". This drastically improves speed, also for a lot of other functions that rely on automatic determination of antibiotic columns.
* Functions `get_episode()` and `is_new_episode()` now support less than a day as value for argument `episode_days` (e.g., to include one patient/test per hour)
* Argument `ampc_cephalosporin_resistance` in `eucast_rules()` now also applies to value "I" (not only "S")
### Other
* Big documentation updates